Pign176233.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001700.1:971861-980995[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.44 1.7e+02 5.3 0.0 12 38 2 27 1 29 0.86 2 2 2.2e-09 8.6e-07 31.9 0.0 1 35 93 128 93 133 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGCTCTGGGGTCCCTATTAAACCTGCAGCTGAACAATGTAATATTCCTGTAATGACCCTGTGGAGACGATCTCGTGCTGTCGGAGTTATTAGCAGCAGAGCTATGACTTATTCATTACGGCCTCAAAATAATAATTCTGTAGTATTTAATGGAATTTctaatatggacaatattgacaATAATTATAGTGAATATAGCAATGATTTTGCGTGGGAAAATCAATACGAGTATTATTACCCAAGCTTACTAAAGTTAAAATCGCCGACATGGACACAAGACCAACTTAAAGAAGCAATTGATGCTGTAGTAAAACAGAGAATGCGTTTCACTCAAGCATCGTCATATTATGGAATTCCCAAAGGAACTCTTTATGATAATATCCTTGGCAAATCTAAACGCATGGCTGTTCTTGAGGAAGCAGGTTTGACTCCTAGTGAAGAAGCTGCTGTTTTAGAATTCTGTTGTGATGTTTCTATATCTCCTTACAATAGACGAACAAAAAAgtctcttaatcaaatattaaattttgtagtaaaagttAGACGTTTTCGAGATCCAGAGTTCATGTTTACAGGCGTCTCAGGATTTCGTTGGTGGTGGGCTTTTTGTAAAAAACATAGCATCGTTTCATTATATTACGATAACAATGCTTCAAGAAATTGA
- Protein Sequence
- MVRSGVPIKPAAEQCNIPVMTLWRRSRAVGVISSRAMTYSLRPQNNNSVVFNGISNMDNIDNNYSEYSNDFAWENQYEYYYPSLLKLKSPTWTQDQLKEAIDAVVKQRMRFTQASSYYGIPKGTLYDNILGKSKRMAVLEEAGLTPSEEAAVLEFCCDVSISPYNRRTKKSLNQILNFVVKVRRFRDPEFMFTGVSGFRWWWAFCKKHSIVSLYYDNNASRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -