Pign166054.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001576.1:208068-209954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00029 0.11 15.5 0.0 2 32 19 48 18 52 0.93 2 2 3.2e-06 0.0013 21.8 0.0 4 41 306 342 305 345 0.89
Sequence Information
- Coding Sequence
- ATGATAAGAACATATAAGAAGAAGCTGGGTACAAGAATGTACCAAAAGTTTTCAGAAAATACTTTAGAAAAAGCACTCGAAAAAGTTGTTCATAACTGGTCATTACATCGAGCAGCTAAAGAATATGCCATCTCATATGGAACACAATTAACAAATGTCACGGATTGCATCACAAAAAATCTGCTACATGTAGTGATGCCACTAACTGCGTTGGATCTTCAAATGATTACAAAAAGTTTTCTGGATCGACGTGGAATTCGAGTTAGCAAGTTTAAGAACAACATTCCTGGTATAGATTGGGTTCATTCATTGTTAAAACGGCACCGTGACAATTTAACCAGAAAAGTTGCTGCTAATATTGAAAAAGCTCGAGCCGATATTTCTATTGGtataatacaagaatattttaCAAACCTGGAGGAGTCTATTAGAGATATACcaaaggaaaatttgtttaactacGATGAGACTAATATGGCTGATGATCCTGGTAAAAGGCAAATTCTTTGTAGAAGAGGAATGAAATATCCTGTAAACAGTGATGCAGACAACATATGGGATCGTTGGACAGAATGTGGCCCTAAAGGAACCCCATGCTGCACAGATCGTTGTTGCTCTTCTGGTAGCCGATATAATAGATCAAAAAGTGGTTGGATAGATGCAGCAATCTTTACCGATTGGTCTTCTTTGACATTCTTGCCTCATGCAGTTAGGCTTCCCGGTAGAAAAGTTATCATAGGAGATAACTTAGTGGCACATCTTACAGATGAAGTGATTGATCTTTGTCAACAAAACAATATTACTTTTATCTTTCTACCTAAAAACTCGACACACCTGACTCAACCACTTGATGTGTCATTTTTTAGACCTTTAAGAACAATGGCAGAAAGAAAAGAACAAAGCTATACCATACAGCAAATTCAGCAAGCAATAGCTGACATTGAAAGGGGATTTAGTGTTCGCAAAGTTTCTCAAATGCATGGCATTCCAAGAGCAACTTTGCAAAGGAAATTAAAAGTGGGGACAAAACTGGCCACACAGAAGGGCCCATGTACAGTGTTCACTAAGGATCAAGAAAGAGACATTGTCACATGGGTAAAAAGCATGGCAACCACAACTCGGGATGCAAGATTGTCAGTTGGTCTACACTTTCAATAA
- Protein Sequence
- MIRTYKKKLGTRMYQKFSENTLEKALEKVVHNWSLHRAAKEYAISYGTQLTNVTDCITKNLLHVVMPLTALDLQMITKSFLDRRGIRVSKFKNNIPGIDWVHSLLKRHRDNLTRKVAANIEKARADISIGIIQEYFTNLEESIRDIPKENLFNYDETNMADDPGKRQILCRRGMKYPVNSDADNIWDRWTECGPKGTPCCTDRCCSSGSRYNRSKSGWIDAAIFTDWSSLTFLPHAVRLPGRKVIIGDNLVAHLTDEVIDLCQQNNITFIFLPKNSTHLTQPLDVSFFRPLRTMAERKEQSYTIQQIQQAIADIERGFSVRKVSQMHGIPRATLQRKLKVGTKLATQKGPCTVFTKDQERDIVTWVKSMATTTRDARLSVGLHFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -