Ppul052918.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982979.1:8404566-8447001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.098 16 7.8 1.3 1 23 275 298 275 298 0.93 2 12 0.0019 0.31 13.2 1.5 1 23 305 327 305 327 0.98 3 12 0.019 3.2 10.0 0.8 1 23 357 380 357 380 0.94 4 12 0.00058 0.097 14.8 2.3 1 23 383 406 383 406 0.97 5 12 2.1 3.5e+02 3.6 1.6 5 19 413 427 410 432 0.89 6 12 0.14 24 7.3 0.7 1 23 680 703 680 703 0.92 7 12 4.2 7e+02 2.6 0.2 1 23 710 734 710 734 0.84 8 12 1.6 2.7e+02 4.0 1.4 2 23 739 760 739 760 0.94 9 12 3.1 5.1e+02 3.1 2.8 1 23 764 787 764 787 0.94 10 12 0.004 0.66 12.2 7.6 1 23 790 812 790 813 0.96 11 12 0.0079 1.3 11.2 2.7 1 20 816 835 816 839 0.90 12 12 0.02 3.3 10.0 0.6 3 22 855 874 854 878 0.92
Sequence Information
- Coding Sequence
- ATGTTGAAGATTCTGCTCCAGAGCACCGATGACATCAAACTGTGTTGGGAGTGTGTAGCAAAACTGAAGAAGTTCAGGTTGTTCCAAGCGCAGCTGCGTAAAGCACAAGAAATGCTAGTACAATTTTTGTATGGTTTGGAACCGTCAGTACCCCTATCCAAACTAAAAACATTCACAAAAAGTACATATGACTATAAAATACATCACAAAAGATTAAAAAGGAAAATTCAAAACTTAGACGACCACACCGAAGAACCAATTGAAAATAATCATGATCAATcagatataagtaaaataataaatgaaaatgaaacaatCAATAAGCTCAAAGATAAACTATTGAGAACAATAGCCAATGATTTCAAAGACTCGGAAATTAAGACAGAAATAGTATCCGAGTTGAATGATGAAGAGAATAAGTCTGTCATATATGCCACTGAATTTCTAAGTCATATTAATAAAGACACAAAAACTGATACTGAGTGCTTGAAGAATTTGACGGCCAGTGATAATTTGATGCACAATATTGACCAAATTGATGATGATTTTGATCATGATACCGATTTTctttatgatataaaaatggAAGAGGTTAAAAATGAAACGGATGAAAGacagAGAAAGCGAAGAAAGAAAATTGCTAAGGAACATTGGAATAGATACAAAAGGGTACCGAAGGAAAATGCCAAGCTAATAGAAACAAAACAAAGGAACTGGGGCGATGCACAAGCTTACTTCACAAAGGTATACTTTAATGAACAAGAAATGGAAGAACACATATTCCCAAGGGAGAGACATTTTGCTGACTCAGCGCGGTATCCATACAGCTGTTCAACGTGTAAGCTCGGGTACAAGCTGCAGCTCGACTTGAAGAGGCATAACAACTTGAATCATCGCAAACCAGGCTCTTCATACAAATGCTCATACTGCCACAAGGTACAACCCTCCCAACAAGATTTAGAATCACACTGGCGGGAACATACGCCCATAGCTAAATGTAAATTGTGCTGCAACGTGCTGAGGCCTAGAGGGATGAAACAGCATCTAAACACAGCGCATACCAGGCGTTACTCGTGTGGATACTGTACGATGACGTTTGAGACGCTGACGTCATTCGGTGCCCATTTCCGTGACATGCACATGAAGTTTACATGTGACTATTGTAAGAAAGACTTTAAAAGCAAAAGCAGAATAGCATATCATATTAGaaATATGCACGTGCCTGCCTTCTGCATAGACTGCAATCGTTCTTACCTCAACCGAAGCCAGTTGCAAAAGCATTGTATATTGATGCATCCGAAACGGGCGAACAGAACTGAGGGCGTAGAAGACACAAAGCTATGCTGGGAGTGTATTGCAGTGCTCAACAAGTTCAAATCATTCCAAAATCAGCTCAAAAAAGCGCAAAATGTTTTGATGCAAATGCTTTATGAATTGAATTACAACCCTGTCACATTATCAAAACTAACAATCACGAAGAAATATTACTATGATCAAGACTACCAACATATAGAAACGGAACACacaaagaagaaaaagaaacacAAAGAACCTCAAGAAATCCTAATAGACTTACCGATAAAAGAAAATACCGACACAATAGTTAATGTTGACAATATACCCGATAGTTctataaaagaagaagaaggcaATGCATATGATTCATTTGCTGATGATGATCTAACTGATTTAAAGGATTATATCGACAATAAAGAAGATGTTGCAGATTATAAAGTAGATGAAACAGATTATAAGGAAAAATTAGACAGTGCTAATGAAAACAACGATTATATTGACAGTaatgaaacatcaaaatcaattgGATCCAAAAAAGTGAGAGCTAAAAGACGCAAATTAGTGCAATCGAGAGAAAACAGTGTAAGCTACTATAAACAATATGCAACGTTGATTAAAAGGAAGAAGATTGATTGGGGTAAAGTTCAGAATTATTTCACAATGATAACGTTCGATGAAGCAGAAATGGAGGAGCATTTCTTGAGGAAAGAAAGAAAGTTCAGTGAATACTCACGGTTTAAGTATAAATGTGTGCCGTGTGAATTAGGTTTTATGAGAAAGTTTGATTTGACAAGGCATAGCAATTTAAATCATCCAAAGcCCGGTGGTCCCTTCAAATGTACAGTTTCGACCTGTCTCAATACATGGCCCAATTTAGAAGCCCTAAAGAAACATTGGCGGGAACATACGCCCATAGCGAAATGTAATATATGTGGAGACGTGTGCAGACCTAGAGGCATGAAGAACCATTTGAACTACTCCCACACAAAGAAATATGCATGTCAGTTCTGCAAATTGGAGTTTGGtaaaattttACACTTCAGTCGTCATTACAAGGAGATGCATCAGGATTATTACTGCGATTACTGCAATGCGTGCTGTAAAAGCAAAATATTAGTACAGAAGCATATTAGAACGCATCACACAAAGTTTACATGTAAAGAATGCAACCGTCAGTATCCAAACTATAGACAATTCAAGAGGCACAACTACGAAGTACACCCCGATAAGTTCTGCAAACTCCCCGAGAGGCCGGAGTTGGCTTACTGCGTTGAATGTGACAAGCAGTACCCCAATGAACGGAAGTATAAGAAGCATTTGAAGATATCGCCTAAGCACGCTGAGATTAAACAAGTattgtaa
- Protein Sequence
- MLKILLQSTDDIKLCWECVAKLKKFRLFQAQLRKAQEMLVQFLYGLEPSVPLSKLKTFTKSTYDYKIHHKRLKRKIQNLDDHTEEPIENNHDQSDISKIINENETINKLKDKLLRTIANDFKDSEIKTEIVSELNDEENKSVIYATEFLSHINKDTKTDTECLKNLTASDNLMHNIDQIDDDFDHDTDFLYDIKMEEVKNETDERQRKRRKKIAKEHWNRYKRVPKENAKLIETKQRNWGDAQAYFTKVYFNEQEMEEHIFPRERHFADSARYPYSCSTCKLGYKLQLDLKRHNNLNHRKPGSSYKCSYCHKVQPSQQDLESHWREHTPIAKCKLCCNVLRPRGMKQHLNTAHTRRYSCGYCTMTFETLTSFGAHFRDMHMKFTCDYCKKDFKSKSRIAYHIRNMHVPAFCIDCNRSYLNRSQLQKHCILMHPKRANRTEGVEDTKLCWECIAVLNKFKSFQNQLKKAQNVLMQMLYELNYNPVTLSKLTITKKYYYDQDYQHIETEHTKKKKKHKEPQEILIDLPIKENTDTIVNVDNIPDSSIKEEEGNAYDSFADDDLTDLKDYIDNKEDVADYKVDETDYKEKLDSANENNDYIDSNETSKSIGSKKVRAKRRKLVQSRENSVSYYKQYATLIKRKKIDWGKVQNYFTMITFDEAEMEEHFLRKERKFSEYSRFKYKCVPCELGFMRKFDLTRHSNLNHPKPGGPFKCTVSTCLNTWPNLEALKKHWREHTPIAKCNICGDVCRPRGMKNHLNYSHTKKYACQFCKLEFGKILHFSRHYKEMHQDYYCDYCNACCKSKILVQKHIRTHHTKFTCKECNRQYPNYRQFKRHNYEVHPDKFCKLPERPELAYCVECDKQYPNERKYKKHLKISPKHAEIKQVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -