Ppul050229.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:16977063-16978364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0005 0.083 15.0 0.3 3 21 107 125 105 126 0.92 2 10 0.0022 0.36 13.0 0.0 3 23 133 154 131 154 0.96 3 10 4.6 7.6e+02 2.5 0.2 3 23 161 182 160 182 0.91 4 10 3.8e-06 0.00063 21.7 2.5 1 23 187 209 187 209 0.98 5 10 1.1 1.8e+02 4.5 1.7 2 20 213 231 212 233 0.92 6 10 2.4e-06 0.0004 22.3 0.6 1 23 259 282 259 282 0.95 7 10 0.0036 0.6 12.3 0.5 1 23 288 310 288 310 0.90 8 10 0.033 5.5 9.3 0.1 1 23 316 338 316 338 0.97 9 10 0.0024 0.39 12.9 0.7 1 23 344 367 344 367 0.95 10 10 0.00025 0.041 16.0 0.2 2 23 374 396 373 396 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAGAGTTTATGTCCACTGGGCGCTTGCGTGACATGCGCAAGCGCCGCCCTCGCCGCGCAAGAGTTTCGATTATTCGTCCGAAACTCGGAAAAGCTCTGGCTCAAAGCCGTCTCGAATCTGACAACTGTGGATGATGATAACTCTGACGCTGCCAAGTCAATATGCGCTTTTGTAACCCAAAGCGATCTTACTATCCAGACCACCAAAGACTACACGGGGGGCGAACCGAAAACAGTGGTTAATCGTTCCAAAGCGAGAGTCAAAAAGACAAAACGCAAACCCAGAACCGTCCGGAATGGCCCTTTGAGCATATGTCCAGACTGCAATAAAACGTATGCAAGTCCATATTTACTACATGAACATTTCAAGAACAGTGGACAGAAGGATGCTTGTCAAATTTGCGGAGTGATCACCTCCCGAGGGTCAGATATGAAGCAACACATGATGGTGGCACACAAAGAAAACGCTTTGTTGTGCTCCCAATGCCCTGCATTATTTTTGAAGGAAACTGAATTTCAAAAGCATGTAGAGACGGCTCATATTTCTGGGTCGTTTACATGCATGGACTGCGGTAGGACCTTCCCAAGGAAATCAACGTTTGAGCATCACGCCCAAATGCATGGAGTATTGACGTGTCGGAGCTGCAACCTTCAGTTCACCAACAGAATATGCTACAGAGAGCACCGGGCTCAGTGTGAACCAGGAGCAAAACCTGATACCAAAAACTTACCCAGAAATCGAAGGAGCAACATTCGAGATCCAGCTGTGTTTATATGTGATTACTGCAATAAAAGTTACAAAACGCGGCCGCAACTCAAAAACCACATCCTGTGGATTCACATGGATGTAAGACCTCATCAGTGTCAGTGGTGCGGAAAAAGGTTTTATACGGTTGCCAGACTGGCTGAACACAGTGTAGTGCATACTCGCGCGCGTAATTTCGAATGTGACATCTGTGGTGCGAAGTTAGTTTCCAAAATGGCCGCCGTGTACCACAGACGACGTCATACGGGCGAGAAGCCGTACAAGTGCGACGATTGTGATGCAACCTTCATTTCATCGTCTCGTAGACTAGAGCACGCTAAACGAAAACATTTGAAAGGCACTAGGATCCAGTGCCTGCAATGCCCGGCCAGTTTTGTTAGGAAAGGTGAACTAAAAAAGCATGAATACAAAGCTCACACTAAAGCTGATGCGGTGAAATCTGAAATTGTTGATAATTTTGAAAGTAGTATTGTTATAGGAGACGTGCATACTCTCACGGAGAAAGAAAATATCACTGTATATGTGACATGA
- Protein Sequence
- MEESLCPLGACVTCASAALAAQEFRLFVRNSEKLWLKAVSNLTTVDDDNSDAAKSICAFVTQSDLTIQTTKDYTGGEPKTVVNRSKARVKKTKRKPRTVRNGPLSICPDCNKTYASPYLLHEHFKNSGQKDACQICGVITSRGSDMKQHMMVAHKENALLCSQCPALFLKETEFQKHVETAHISGSFTCMDCGRTFPRKSTFEHHAQMHGVLTCRSCNLQFTNRICYREHRAQCEPGAKPDTKNLPRNRRSNIRDPAVFICDYCNKSYKTRPQLKNHILWIHMDVRPHQCQWCGKRFYTVARLAEHSVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCDDCDATFISSSRRLEHAKRKHLKGTRIQCLQCPASFVRKGELKKHEYKAHTKADAVKSEIVDNFESSIVIGDVHTLTEKENITVYVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -