Ppul048946.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:6408302-6417917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.52 87 5.5 0.5 1 23 113 136 113 136 0.93 2 17 0.033 5.4 9.3 0.1 3 23 164 184 162 184 0.96 3 17 0.0011 0.19 13.9 0.6 2 23 207 228 206 228 0.96 4 17 0.06 10 8.4 0.8 1 23 260 283 260 283 0.87 5 17 0.019 3.1 10.0 1.5 1 23 289 312 289 312 0.94 6 17 0.0015 0.25 13.5 3.1 2 23 320 342 319 342 0.95 7 17 0.0028 0.46 12.7 1.9 1 23 501 524 501 524 0.93 8 17 0.76 1.3e+02 5.0 0.3 2 23 551 573 550 573 0.94 9 17 0.032 5.4 9.3 1.8 1 23 595 617 595 617 0.98 10 17 0.0066 1.1 11.5 0.3 1 23 621 643 621 643 0.96 11 17 0.91 1.5e+02 4.7 3.2 1 14 648 661 648 671 0.88 12 17 0.0079 1.3 11.2 1.4 1 23 677 700 677 700 0.94 13 17 0.00098 0.16 14.1 0.3 3 23 709 730 707 730 0.93 14 17 0.00052 0.087 14.9 0.7 1 23 736 758 736 758 0.94 15 17 1.1e-05 0.0019 20.2 1.6 1 23 764 786 764 786 0.99 16 17 0.0068 1.1 11.4 0.5 1 23 792 814 792 814 0.94 17 17 7e-05 0.012 17.7 0.1 1 23 818 841 818 841 0.98
Sequence Information
- Coding Sequence
- ATGACTTTAGAAGAAGAAAAGGTAGATACGTTAACTACATTGCATTCGATGTTTAGAAATGGAACGCTGCTTCATCGCCGCATGCCTCGCACGCATTTAAAACGCATAGATAGATTTTATGATATCACTCAAGGTAATCAACAACAAGACTCAAATGAAGACGACACAGAAACAGTAAGAACTGTCACAGAACTTAaagctaaaagaaaaaaaccatTGACAAAAGTCaatgatttaaaatattcttcacCGGAACTAGTTAAGCAGCTGTTTAATATACGACAAATACTGTTGTTAACAAACGCGACGCCTATAGAGCGCTATACTGATAAAGGTTACTCTTGTTGCTTTTGTTCTGGCCAGTATGTTGGTCCGGCAGACCTCAAAAGGCATACAATAGAAGAACATGAAGATAATACCAAAGAAACGTTCATGGAACAGAAAACTATCTACGATTTTTTAGTTAAGCTTGATATCACGTTATTGGCTTGTAATATTTGCGATAAGAGGATAGAAAGTATAGAAAACATGTACGAACATCTCAAAAGTCATGGCAAATTTGTGTATAGTAATTTAGAAACATATACGTTACCATTCAAATTTCGTGATGAATTGTTGAAATGTGCAGTATGTGAAGTTGAATTTACTAATTTcaagtcattgcaaactcacatGTACTCGCATTACAAGAACTTTTATTGCGATGAGTGCGAAGCTGGATTTCTCAATCGGAAAATGGCAGATGCACACTACAGCTATATGCACCGTACAGGCACGTTCCCATGTTCATACTGTCCGGAAAAATTTGAAACTCTCTCCAGAAAGCGAAACCACGAAGTCTCATCCCACGACCACTTGAAATTGTACAGATGTGGGTATTGCGATCTGAGATTTAAAACGTTCGATCGGAAACGTATACATTTAGCTAAAGAGCACAACGTTAGGAAACCTCTGCTGAGCTGCAAAGCATGCGACAAAACTTTCCATAAATCTTCTCTACTCTCCACGCACTGGAGAAAGATGCACATGATGGAAAAAAGATTTAAATgTTTCCTATGTAACATCGGTAAGGACGACGTAAAGAATGAAGTCGAAACGAAGTGGGGATTGACAATAAAGAAGATTAAAACTGAACGTGATGGCTTGTTTGAACCACATGACactaaacctaaaattactagaCTTAACTTTCGCATAGCAGATGTCATAGAAGGACCTAACACGACTAGCAAACCCAAAAGACGTTATTCCACAAGAAACCTTAAAAAACGTAACGATAAAACTACTAATTTAATGCAATTGGAAGAGGACGTACTAGAAACCAAagttgagaaaattaaaaagccTAAGCGTAAAGTACTTGAACTAAAACAACCGGACGacactgatgatgatgacatgaAAAGGTCACTAGAATTGGACAAGCAAAGATACAATATTCGTATGATTATGCAATTGTCTAACGCTACTCCAATCAGAACCCACTACTGTGGCAACGGATTTGCGTGCTGCTTTTGCGATAAATTCTTTCCAAAAGCTGCCGATCTCAAAAATCACACAATACAAAACCacgaaaagaaagaaaagaacaCCTACATGCAAAAAACATTCCTATCGAATTTTGTTGTGAAACTGGATATTACAGCATTGCAATGCAGTCGTTGTAAAATTGAACTAGAAAAGGTAGACGATTTGTTTAACCATTTAAAGGAAAGCCACAACAAATCACTATATAAGGACATTAAAAGCCAAATAGTGTGTTTTAAATTCGACGAAGACTCGTTTAAATGTGTGTTTTGTAAGTTTGAATACGCCAGTTTTAAGTCATTGTTAGAACACATGAATCAACATTACAGGAATTTCGTTTGTACAGAATGTGACTCTGGATTTGTCAATCAGAGGATGTTATCGATGCACGCATACAAACATAAGAAAGGGACATTTGAATGCGAAACTTGTAAGAAAGTCTTCGACACTTACAGTGGATGTAAGTTTCACGAGAAGAACGCCCACAGCGCTAAAAAAAGATACAAATGCTTCCAATGCGGTGAGAAATTCACCAAAGCTAGATTCAAAAGGGAGCACATGATTGAAATTCACGGTGTAAAATTTGCCTATTTGCCATGCTTAGCTTGCGATAGGACGTTTAGAGATAGGAACGCTTTAAGGATCCACACCCAAAGGGATCATTTGATGGAGAGAAGGTTCAAATGTACCGGCTGTGATAGGACGTTCTTCACCGCAGAGATGATGAAGAATCACTCGGTAGTTCACTCGGGGTCGCGTGACTTCAAATGTGAAGTTTGCGGGAAAGATTTTGCGAGAAAGAAAACACTTCTCTTCCATATGCGTACCCATAAAGAGGATAGCAAGTTTCTCTGTCAGATATGCATAAAAGTTTTTCATACACAGTCGGCATTGGACGTGCATATGGAGTTGCATTCGGGACAATTCAGTTGTGAGAAATGTCCTGAGACTTTTGCTACGCTGCCTGTCTTGCAGACTCATATGATGACAATGCACGCAGAAATTGTGTAG
- Protein Sequence
- MTLEEEKVDTLTTLHSMFRNGTLLHRRMPRTHLKRIDRFYDITQGNQQQDSNEDDTETVRTVTELKAKRKKPLTKVNDLKYSSPELVKQLFNIRQILLLTNATPIERYTDKGYSCCFCSGQYVGPADLKRHTIEEHEDNTKETFMEQKTIYDFLVKLDITLLACNICDKRIESIENMYEHLKSHGKFVYSNLETYTLPFKFRDELLKCAVCEVEFTNFKSLQTHMYSHYKNFYCDECEAGFLNRKMADAHYSYMHRTGTFPCSYCPEKFETLSRKRNHEVSSHDHLKLYRCGYCDLRFKTFDRKRIHLAKEHNVRKPLLSCKACDKTFHKSSLLSTHWRKMHMMEKRFKCFLCNIGKDDVKNEVETKWGLTIKKIKTERDGLFEPHDTKPKITRLNFRIADVIEGPNTTSKPKRRYSTRNLKKRNDKTTNLMQLEEDVLETKVEKIKKPKRKVLELKQPDDTDDDDMKRSLELDKQRYNIRMIMQLSNATPIRTHYCGNGFACCFCDKFFPKAADLKNHTIQNHEKKEKNTYMQKTFLSNFVVKLDITALQCSRCKIELEKVDDLFNHLKESHNKSLYKDIKSQIVCFKFDEDSFKCVFCKFEYASFKSLLEHMNQHYRNFVCTECDSGFVNQRMLSMHAYKHKKGTFECETCKKVFDTYSGCKFHEKNAHSAKKRYKCFQCGEKFTKARFKREHMIEIHGVKFAYLPCLACDRTFRDRNALRIHTQRDHLMERRFKCTGCDRTFFTAEMMKNHSVVHSGSRDFKCEVCGKDFARKKTLLFHMRTHKEDSKFLCQICIKVFHTQSALDVHMELHSGQFSCEKCPETFATLPVLQTHMMTMHAEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -