Basic Information

Insect: Plagodis pulveraria
Gene Symbol: -
Assembly: GCA_963890685.1
Location: OY982949.1:9474300-9500964[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0022 0.37 12.9 5.3 1 23 228 250 228 250 0.98

2 11 9.7e-06 0.0016 20.4 1.5 1 23 256 278 256 278 0.98

3 11 0.00047 0.078 15.1 3.3 1 23 284 307 284 307 0.95

4 11 0.028 4.6 9.5 3.3 1 21 313 333 313 335 0.95

5 11 0.00013 0.021 16.9 2.7 1 23 341 363 341 363 0.99

6 11 2.5e-05 0.0042 19.1 3.1 1 23 369 391 369 391 0.98

7 11 0.0062 1 11.5 0.5 1 23 399 422 399 422 0.96

8 11 0.014 2.4 10.4 5.0 2 23 429 450 428 450 0.96

9 11 0.0001 0.017 17.2 1.5 1 23 456 478 456 478 0.99

10 11 2.6e-06 0.00043 22.2 1.4 1 23 484 507 484 507 0.95

11 11 4.7e-05 0.0078 18.2 1.3 1 23 521 543 521 543 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0022	0.37	12.9	5.3	1	23	228	250	228	250	0.98
2	11	9.7e-06	0.0016	20.4	1.5	1	23	256	278	256	278	0.98
3	11	0.00047	0.078	15.1	3.3	1	23	284	307	284	307	0.95
4	11	0.028	4.6	9.5	3.3	1	21	313	333	313	335	0.95
5	11	0.00013	0.021	16.9	2.7	1	23	341	363	341	363	0.99
6	11	2.5e-05	0.0042	19.1	3.1	1	23	369	391	369	391	0.98
7	11	0.0062	1	11.5	0.5	1	23	399	422	399	422	0.96
8	11	0.014	2.4	10.4	5.0	2	23	429	450	428	450	0.96
9	11	0.0001	0.017	17.2	1.5	1	23	456	478	456	478	0.99
10	11	2.6e-06	0.00043	22.2	1.4	1	23	484	507	484	507	0.95
11	11	4.7e-05	0.0078	18.2	1.3	1	23	521	543	521	543	0.95

Sequence Information

Coding Sequence: ATGCCAGCGACTAGAAGGTCCTATGGTAGAAATGCTGCGAAGACCTTCAATATTTTACCAGAAGAAACTCAAgACCAAATAGCATCCAACATAAAGCACGTTCAACCTGAAATACACTCTCTTGGCTTGTCTGATCATGATACAGCTCAAACCATTACATTAAAAGCAAGTAAACAGAAAGCTTTGAGCCATTGGTTTGAATACAGACGAGACTATAGTCCCGACAATATGAGAAAATTTGCTGATTTTGTTACCCAACAGGAAAATGCAGAGGATGATATTGATGCCACTGGAATCACTTATTTTGTTGATGAAGAAGGGAGGTACTATTATCAACCTGGGCAAAGCTTAGTGGCTATTCCTGCACCTGAAGATAATAGCACAATTATTCCGGATGCTGTCCACACTGAACAGGATCCTTCCCAACAAGTCACAATAAAAACAGAAGGATATCAGACAGTGACTTTGGTGCCATCTAATACCCCTAATGGAGAAGTCAGTTATGTACTTGTTGTGCAAGAGGAGTCTCAGCCTATGCTTAATGTTGATATAAAGGAAGAGAAACCATCGGTAGATGTGTATAACTTCGAAGAAGAAGAGGAGGTGGAGTCGCCGGAGGaagagccgccggccgctcggCCTGTCAAAAAGAGACGCAGGCCGCGCACGAACCGCTCCAACTTCACGTGCAATTTCTGCTCCTACAGCAGCCACAGAAGGTATTTGTTGATCCGTCACATGAAATCTCATTCTGAGGAGCGACCTCATAAGTGTGAAGTGTGTGACCGTGGTTTCAAAACGCTTGCCTCGCTTCAAAACCACACCAATATGCACAATGGTATCAAGCCCCATATTTGCAAGTACTGTAAATCGAAGTTCACCACTAGCGGTGAGCTGGTGCGTCATGTCCGATATAAACATACTCACGAGAAACCCCACAAATGCAACGAGTGCGATTATGCCTCCGTAGAACTTTCTAAGCTGCGTCGGCACGTACGTTGCCACACTGGAGAGCGGCCCTACCAGTGTCCCCACTGTACTTATGCATCTCCGGACACATTCAAATTGAAACGTCACCTGCGGACGCACACTGGGGAAAAACCATACAAGTGTGATATGTGTACGATGTGCTTCACTCAGTCAAACTCTCTGAAAGCCCACCGCCTTATACACAATGTGGCTGACAAACCCGTGTATGCCTGCGAGCTGTGCCCGGCCAAGTGCGGTCGCAAGACGGACTTGCGCATTCACGTCCAAAAACTGCATACCTCTGATAAACCTCTGAAGTGCAAGCGCTGCGGGAAGTCCTTCCCTGATAGATACTCGTGCAAAATGCACAATAAGACTCATGAAGGTGAAAAATGCTATAAGTGTGATGTATGCCCATATGCTTCAACCACTCTACGTCACCTTAAATCCCATATATTAAAGCACACTGACGAGAAGCCATTCGCTTGCGAAGATTGTGATCAAACTTTCAGGCAAAAGCAACTGCTCCGACGTCACCAAAACTTGTATCACAATCCAGAGTATGTGCCAAAGGCTCCAAAGGAGAAGACCCACGCGTGCGCCCAATGCAGCCGTACATTTGCTCACAAAGGAAATCTTATTCGCCATCTGGCCATACACGATCCAGACTCTGGCCACCAAGAGAGAGCCTTGGCGCTTAAGCTTGGAAGgcaaaaaaaggttaaataTATAGATGGCGAGTCACTAAAGGTGATGCAAGACGAGGGCCGATCTAACAACACGCAAGTACTTAAGATCGGCGTATCTACCGAGTTGAAACGTGGTGAGCTGGTGACTGTGAACGATGGGGACGGCCAGCAATATGTAGTACTGGAAGTGATCCAGCTTGAAGATGGAACTGAGCAACAAGTGGCTGTTGTAGCTCCCCAATACCTCACCATGCGACGCAAAGatggTGACAATGATATGATAATGGAGATTGATGGAGCAGCTGAACGCGCAGATCAAAATGGCGATTTGGAAATGGAGGTCgagatggatgatgatgaagaagaagaggaagaagaGGAGGAGGAAGATGAAGAAGATATGCAAACGAAAATAAAGAATCATATCTCGGAGCAACAGAAGGCGGCCGTAGAGAGATCAATCAAGCTGGAGAAGGAAGTGGACGCCTGCTTCGGTTTTGATgAGGAAGATGAGAACGAATCAGAAGAAACGTTCAATGAAAACGTAATTTACGAGCTAGTGTAA
Protein Sequence: MPATRRSYGRNAAKTFNILPEETQDQIASNIKHVQPEIHSLGLSDHDTAQTITLKASKQKALSHWFEYRRDYSPDNMRKFADFVTQQENAEDDIDATGITYFVDEEGRYYYQPGQSLVAIPAPEDNSTIIPDAVHTEQDPSQQVTIKTEGYQTVTLVPSNTPNGEVSYVLVVQEESQPMLNVDIKEEKPSVDVYNFEEEEEVESPEEEPPAARPVKKRRRPRTNRSNFTCNFCSYSSHRRYLLIRHMKSHSEERPHKCEVCDRGFKTLASLQNHTNMHNGIKPHICKYCKSKFTTSGELVRHVRYKHTHEKPHKCNECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDMCTMCFTQSNSLKAHRLIHNVADKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSCKMHNKTHEGEKCYKCDVCPYASTTLRHLKSHILKHTDEKPFACEDCDQTFRQKQLLRRHQNLYHNPEYVPKAPKEKTHACAQCSRTFAHKGNLIRHLAIHDPDSGHQERALALKLGRQKKVKYIDGESLKVMQDEGRSNNTQVLKIGVSTELKRGELVTVNDGDGQQYVVLEVIQLEDGTEQQVAVVAPQYLTMRRKDGDNDMIMEIDGAAERADQNGDLEMEVEMDDDEEEEEEEEEEDEEDMQTKIKNHISEQQKAAVERSIKLEKEVDACFGFDEEDENESEETFNENVIYELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01208555;
90% Identity: -
80% Identity: -