Ppul048879.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:5800257-5805546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 96 5.4 0.1 2 23 72 94 71 94 0.93 2 19 2.6e-05 0.0043 19.0 3.4 1 23 117 139 117 139 0.97 3 19 0.065 11 8.4 0.9 2 23 144 165 143 165 0.95 4 19 1.4e-05 0.0024 19.9 0.8 1 23 170 193 170 193 0.95 5 19 0.86 1.4e+02 4.8 3.0 2 23 203 225 202 225 0.85 6 19 0.00031 0.051 15.7 0.4 1 23 231 254 231 254 0.97 7 19 0.014 2.4 10.4 4.5 2 23 259 280 258 280 0.97 8 19 0.00041 0.068 15.3 5.7 1 23 286 308 286 308 0.97 9 19 0.00066 0.11 14.6 0.6 2 23 318 340 317 340 0.94 10 19 0.94 1.6e+02 4.7 6.3 1 23 417 439 417 439 0.97 11 19 0.035 5.8 9.2 0.3 2 23 467 489 466 489 0.95 12 19 0.018 2.9 10.1 4.0 1 23 512 534 512 534 0.97 13 19 0.11 18 7.7 1.2 3 23 540 560 538 560 0.95 14 19 0.00071 0.12 14.5 4.2 1 23 565 588 565 588 0.96 15 19 0.64 1.1e+02 5.2 4.0 2 23 598 620 597 620 0.88 16 19 0.00059 0.098 14.8 2.3 1 23 626 648 626 649 0.96 17 19 0.033 5.5 9.3 4.5 2 23 654 675 653 675 0.97 18 19 0.00018 0.03 16.4 4.8 1 23 681 703 681 703 0.97 19 19 0.00011 0.019 17.1 0.6 1 23 712 735 712 735 0.96
Sequence Information
- Coding Sequence
- ATGAACGCCTCTAAGTTTATCCGGCACACCACCGCCAGACCCTTCGTCTATTGTCGAAACTTCTTCAAATGCTTCTTCTGCCATGAAGACTACTTGGACATCAAGAAACTTCTCGAACACACTACGTCTCATCAAATTCCCGACCAGGCCAAAATTTTGAATGAACTGCTCAAGAAAGGCAAACGAACGCTCAAAGTTGATATATCAGAACTTAAATGTCGAATGTGCCAGCAAGAATTTGAAGACCTCGACGTGATTAGGGAACATTTAGTGACAGAACATGGCGTCACATTCACGGAGTCGAAAAACGGGGTCGTAGTTTATAATTTATCCACGAAGAGCGAGTTGTTCTTCTGTCACATCTGTAAAAAGAAGTTCCCCACATTTATCCTTCTGAACCGGCATATGAATGTGCACTTCAATAACTCAGTCTGCGAGGTGTGCGGTGCTGGCTTCATGTCGCACCATAGACTAATACAGCACAAGGAAATCCACCAACCAGGAGGATACTCTTGCAACCGCTGCAGTAAAGTCTACACAACTAAAGgcaatttaaaatatcacataTTAGAAGCTCATGAAGGGTCCAAAAAGATGCGAATGCTCCGATGTCCTCACTGCCCTGAAAGATTTGCCGAACACTTCAGGAAATTAAAGCATTTGAAAGATTCTCATGGTATAACTTTTACGTTTGAATGTGATATGTGTAATTCGGTGTTTCCAACCAGAAGAGCTCTGACTTCGCATACGAACAAGATTCATTCGCAGAAGACCCAGTGTGAAATATGTAAGAAATGCTTCAGCTGCATCACGGCTTTAAAAGATCACATGCTCAGTCATTCTGGTGAAAAGAGTCATGTTTGTGGAACGTGTCAAAAATCATATAGTCTTAAGAAGAGCTTGAATCATCACATGAAATCTCATGTTAAAGGAAATCAATTATTAAGGATTACTTGCCCGGGTTGTAGCAACAGGTTTTCGAGCAGGAACGATTTTACTAAGCACGTTAAGGAATGGCATCCAAGCAGCTATTTTGATTATATTCAGACCTTTGAGAAGTCAGGGCAGGGCGTTACGATGAATAAAAAGGAGTACCTTTATTTAGTAAAATTGGTTGGAACGAAGACTGAAGACGGGAAGCAGCGAGAGATCACCAGCCTCTGGGAGCTGACGACCTCGGAACGCATTAACGCCTCAAACATTGTTCGGCTCACCACCGCCAGGCCCTTCGTCTACTGCCGATACTTCTTCAAATGCTTCTTCTGCCATGAACACTACTCGGACATCAAGAAACTTCTCGAACACACTACATCGCATCAGATTCCCGACCAGGCCCATATTATGAAAGAACTGCTTAAGAAAGGGAGAAGAACTCTCAAAGTTGATATATCAGAACTGAAATGTCGAATGTGCCAGCAAGATTTTGAGGACCTCGACTTAATCAGGAAACATTTAGTGACAGAACATAGCATCACATTCACAGAGTCGAAAAACGGGGTCGTAGCTTATAATATATCCACGAAGAACCAGCTGTTCTTCTGTCACATCTGTAGGAAGAAGTTCCAGACATTTATCATTTTGAACAGGCATATGAATGTGCACTTCAGTAACTCAATCTGCGAGGTCTGCGGCGCTGGCTTCATGTCGCACCATAGACTAATGCAGCACAAGGAAATCCACCAACCAGGAGGACATCCTTGCAACCGCTGCAGTAAAGTCTACACAACCAGCTGCAATCTGAAATATCACATAGAAAAAGCTCATGAAGGATCCAGAAGGATGCGAATGCTCCGATGTCCTCACTGCCCTGAAAGATTTACCGAGCACTTCAGGAAATTAAAGCATTTGAAAGATTCTCATGGTATAACTTTTACGTTTGAATGTGATATGTGTAAGTCAGTGTTTCCGACCAGAAGGGCTCTGACTACGCATACGAACAGGCATCATTCGCAGAAGACCCAGTGTGAACTCTGTAAGAAGTGCTTCAGCTGCATCACGGCCTTAAGAGTCCATATGCTCAGTCATTCTGGTGAAAAGAATCACGTTTGTGGAACGTGTCAAAAATCATATAGATATAAGAAGAGCTTGAATTATCACATGAAATCTCATGCTAACGGAAATCAGTTAATAAAGTTTACTTGTCCGGGATGCAGCAACGTGTTTACAAGTAGGAATGACTTTACAAAGCATGTTAAGGAATGGCATCCTAGCAGCTATTTAGATTATATGTATTCAGTTGAGGCTAACTAA
- Protein Sequence
- MNASKFIRHTTARPFVYCRNFFKCFFCHEDYLDIKKLLEHTTSHQIPDQAKILNELLKKGKRTLKVDISELKCRMCQQEFEDLDVIREHLVTEHGVTFTESKNGVVVYNLSTKSELFFCHICKKKFPTFILLNRHMNVHFNNSVCEVCGAGFMSHHRLIQHKEIHQPGGYSCNRCSKVYTTKGNLKYHILEAHEGSKKMRMLRCPHCPERFAEHFRKLKHLKDSHGITFTFECDMCNSVFPTRRALTSHTNKIHSQKTQCEICKKCFSCITALKDHMLSHSGEKSHVCGTCQKSYSLKKSLNHHMKSHVKGNQLLRITCPGCSNRFSSRNDFTKHVKEWHPSSYFDYIQTFEKSGQGVTMNKKEYLYLVKLVGTKTEDGKQREITSLWELTTSERINASNIVRLTTARPFVYCRYFFKCFFCHEHYSDIKKLLEHTTSHQIPDQAHIMKELLKKGRRTLKVDISELKCRMCQQDFEDLDLIRKHLVTEHSITFTESKNGVVAYNISTKNQLFFCHICRKKFQTFIILNRHMNVHFSNSICEVCGAGFMSHHRLMQHKEIHQPGGHPCNRCSKVYTTSCNLKYHIEKAHEGSRRMRMLRCPHCPERFTEHFRKLKHLKDSHGITFTFECDMCKSVFPTRRALTTHTNRHHSQKTQCELCKKCFSCITALRVHMLSHSGEKNHVCGTCQKSYRYKKSLNYHMKSHANGNQLIKFTCPGCSNVFTSRNDFTKHVKEWHPSSYLDYMYSVEAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -