Ppul030030.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- ZFX
- Assembly
- GCA_963890685.1
- Location
- OY982964.1:1204820-1210727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 94 5.4 2.4 3 23 273 293 272 293 0.95 2 12 0.45 75 5.7 0.1 6 23 305 323 305 323 0.97 3 12 2.8e-07 4.6e-05 25.2 1.1 2 23 379 400 379 400 0.97 4 12 3.6e-07 6e-05 24.9 0.4 1 23 407 430 407 430 0.98 5 12 0.0062 1 11.6 0.1 1 23 436 458 436 458 0.95 6 12 0.077 13 8.1 1.3 1 23 592 614 592 614 0.96 7 12 0.00058 0.097 14.8 1.7 2 23 621 643 620 643 0.90 8 12 1.7e-05 0.0029 19.6 4.3 3 23 651 671 650 671 0.97 9 12 5.6e-06 0.00093 21.1 0.7 1 23 677 699 677 699 0.98 10 12 0.0033 0.55 12.4 3.5 1 23 705 727 705 727 0.96 11 12 0.00013 0.021 16.9 4.3 1 23 733 755 733 755 0.97 12 12 0.00028 0.046 15.8 2.3 1 23 761 784 761 784 0.95
Sequence Information
- Coding Sequence
- ATGAATACAGATACCGAACAAGTATTCTTAGTGAATGCCGCTGATGGCCAACCTACATCTATGCAGCGCGATTTTCCAATGCCCGTAGAAGCATTAGCACCTGaagGTGTTCGGGAAACCAATTTGTGTCATATGGTCCAAGACAACTTATCTCACCTGCCTTCAACCAGTATGCCGTTACAAACTCGGACACAAATGTGCCGCCTCTGTGCCACCATCACAGAGTTTGTGGTGCCTATCTTTGAGGGTGAAGGGCTGCAGAACCGCCTTGCTGACAAAATACACCAACATCTACCAATAGAGGTATCGGAGACTGACATCTTGCCAACAGTGATGTGCTTCCAGTGCACCAGCACGCTGCTCGCGTGGCATGAGCTGGTCACATGTTCCGTACAAGCTGATACCGCCATGAGGGAGCGGTACAACCTGCACCAAACGGAACACAAGgTGCAGCAGCATCCTACTATCAGTAATAATCAGGGACAGACTAAAGAAGAAAAgTCAGAACATctatttatactaattaaaaaagtattaatgGAATACTTACATTCGCTAAATTTGGCTGAAAACAACTTACAAATGCAATTGGTTTGCCAAAAATGTCCCATAAAGCCTTCTCTGACAGTGGACAAATTCTCCCAACATATTACAGAACACCATAATGATTTGTCAGAGAGAGATACCATACATATGTTTGTAAAAGACCATGTCACTTTCGAAGAAGCCCTTGAGTCTAGTTCAGAAGGAGAAGGAAATTCAGACACGACAGAACAAACGCAAAACATCGAATCAAAACCATTGCCTACACTCCTCTGTCCTTGTTGCGAAACCTCGTTTTCATCCACCACCCGTCTTATCTACCATCTGAATAAGCACTTGGATATATCAATAGACTTCGGTGTCACATGCTGTGGATTCAATTTCAACAGCAAGATCGATTACGTCGCGCATCTACAAGTGCAGCACGTTAACCGACAAATATACGACACGGAAACCATGTGCAAAAGCTGCTGCTTCACAGCCGATTCAACAGAAGATCTCCAAAATCACGTGAGCAAGGTACACAAAGAAAAAGGACGGTCCAAGAAAATGAGGAACGAAAACGGAAAGAATCAAAAATGGATTCCGGCCGTATGTCCCGAATGCAACAAGACTTTTTCCAACAAATATAACATGTTCGTTCACATGAAATCGCACATCAAAAGCGAGAATCGCTATCGCTGCGACAAATGCGGTCGAGAATATAGCACGAAAGGAAACTTGACCCAACACGTCAGAGTGGCTCACGAAGGGGAGTTTAGATTTGTGTGTAGTGTGTGCGGGGAGAGTTTCCCGACGGGTTCGAGTCGGGACGTGCACGCTCGCCTGCATTCGGGTGAGAGGCCCTTCCTCTGTCAGACCCGCGACCACGGCCCCAATGGAGAAAACCTTATCAAATACGACAGCGACGAACTCGTAAGAGATTTTGCCCCGTCGGATTCCGACGAAGATGACATCCCGCTGGCGGACCTGGCGACGAAAAAGGCCGACCAGTTCTTAAAGTTCTACGATGCCCTCGTAAAGTTCAGAAATCACATAGCCGAAGAACATGCGGATCCCGCAGAACCGGTGTCCGAAGAATCGGAGAGCGAGCTCGTAAACGGAGATAACGGGGATGACGTGGACCAGTACGACGATTTGTCGCACCGAAACATGAGACGAGATAGACTCGATAATGAAACCCGCGCGGAGCTGTCGGCCGCCCGCGTGCGGGTCGACGGTAAACTCCTATACGCGTGCGCTACTTGCGGGAAACGACTCAGCTCGGCTCACACTTACATCTTCCACCGAAGGATACATACGGGGGAACGGCCTTGCGTTTGCCACGTCTGCGGGAAGCAGTTCCGCGCGCCGAACGGCCTGCAGCGGCATGTGACGGAGACGCACGAGCGTCGCCGACGCCCCTCGTGCCGCCACTGCCGCCGCTCCTTCGCCAATTCGCAGAACCTGAAGCAACATATGAGGATCCACACCGGCGAGAGGCCCTACGAATGCGGGTGGTGCGGGAAGAGATTCGCGCAAAGCGGGTCGCTACACGCACATAGTAAAACTCATTCGGACCGACGGCCGCATTGCTGTCCGGAATGTGGGGCTCACTTCCGGCTGCGGGCAGGGTTGGTGCGACATCGGCTGCGGCACACGGGCGAGCGGCCCCACCCGTGCGATCTTTGTACCAAACGTTTCCGACAGCGACATGAGTTAACTGCGCATCGACTGTCGCACGGTGACGTGCGACCGCACGCCTGCGACTACTGTCCGGCCGCCTTCAGGCAACGTCGCGCGTTGCGACATCACGTCAAACGCATGCACCAGTTGGAACCGCAGCAGCCGCCGCCTCTCTACGAACGCGTCGCTCCTTATTAG
- Protein Sequence
- MNTDTEQVFLVNAADGQPTSMQRDFPMPVEALAPEGVRETNLCHMVQDNLSHLPSTSMPLQTRTQMCRLCATITEFVVPIFEGEGLQNRLADKIHQHLPIEVSETDILPTVMCFQCTSTLLAWHELVTCSVQADTAMRERYNLHQTEHKVQQHPTISNNQGQTKEEKSEHLFILIKKVLMEYLHSLNLAENNLQMQLVCQKCPIKPSLTVDKFSQHITEHHNDLSERDTIHMFVKDHVTFEEALESSSEGEGNSDTTEQTQNIESKPLPTLLCPCCETSFSSTTRLIYHLNKHLDISIDFGVTCCGFNFNSKIDYVAHLQVQHVNRQIYDTETMCKSCCFTADSTEDLQNHVSKVHKEKGRSKKMRNENGKNQKWIPAVCPECNKTFSNKYNMFVHMKSHIKSENRYRCDKCGREYSTKGNLTQHVRVAHEGEFRFVCSVCGESFPTGSSRDVHARLHSGERPFLCQTRDHGPNGENLIKYDSDELVRDFAPSDSDEDDIPLADLATKKADQFLKFYDALVKFRNHIAEEHADPAEPVSEESESELVNGDNGDDVDQYDDLSHRNMRRDRLDNETRAELSAARVRVDGKLLYACATCGKRLSSAHTYIFHRRIHTGERPCVCHVCGKQFRAPNGLQRHVTETHERRRRPSCRHCRRSFANSQNLKQHMRIHTGERPYECGWCGKRFAQSGSLHAHSKTHSDRRPHCCPECGAHFRLRAGLVRHRLRHTGERPHPCDLCTKRFRQRHELTAHRLSHGDVRPHACDYCPAAFRQRRALRHHVKRMHQLEPQQPPPLYERVAPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208537;
- 90% Identity
- -
- 80% Identity
- -