Ppul048884.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:5912507-5923266[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.7 1.6e+03 1.5 0.2 1 23 74 96 74 96 0.93 2 17 0.081 13 8.0 0.1 2 23 121 143 120 143 0.95 3 17 0.00012 0.02 17.0 2.0 2 23 167 188 166 188 0.96 4 17 5.7e-05 0.0095 18.0 0.7 3 23 193 213 192 213 0.95 5 17 0.88 1.5e+02 4.8 2.7 1 23 218 241 218 241 0.96 6 17 0.012 2 10.6 1.7 2 23 252 274 251 274 0.95 7 17 0.037 6.2 9.1 0.7 1 23 280 303 280 303 0.96 8 17 0.086 14 8.0 0.6 1 23 360 382 360 382 0.95 9 17 2 3.4e+02 3.6 0.0 2 23 408 430 407 430 0.89 10 17 0.0002 0.033 16.3 3.8 2 23 454 475 453 475 0.97 11 17 1.6e-05 0.0027 19.7 0.1 3 23 480 500 478 500 0.97 12 17 0.016 2.7 10.2 4.7 1 23 505 528 505 528 0.97 13 17 0.0061 1 11.6 0.3 2 23 538 560 537 560 0.94 14 17 0.00031 0.051 15.7 1.7 1 23 566 589 566 589 0.93 15 17 1.8e-06 0.00029 22.7 2.9 2 23 594 615 593 615 0.98 16 17 0.00049 0.081 15.0 0.7 1 23 621 644 621 644 0.92 17 17 0.0012 0.2 13.8 0.5 1 20 648 667 648 669 0.94
Sequence Information
- Coding Sequence
- ATGAATAAGATCTGCTCTAACTGCTCTGCCAAGAAATGGGCGGACGAACCTAATGGTATGTGCTGTGCTTCAGGTTCTCAGAAAGATCAGCAGAGCTCCGAAGAAGCGGTCAGTGATGAAAAAAGGCGCTCAGGAGGCTTGATAAGATCAGAACAGGGTAATGCTGCAACCCTGCTCGAATTCACTACAGCGATACCGTTTAAATACAataaaggatattttaaatgtatatattgtccTGATAAATATACAAACGTATATTCTATGTTACAACATGCGGCGATCCACACTCCGAACAAAGAGTCACTAACAACTGCCGtgaaaactaaatgtatgatTAAAGTTGACATATCAGAATTGAAGTGCAGAATCTGTAACATGAAGTATCCGGACATGGATGATATCAGAGAGCATTTGGTAAcagcacatgagactgtatTCGGCTCAGGCCGGAATGGTCTGTTGCCTTACATTCTTAGCACAAGTAACGGTCTTATGACCTGCCATAAATGCGAGAAGGCGTTCGCGAGCTTCCGCGAATTGAACAATCATATGAGTGAGCACAGTGGTGAAATCTGTGAGACATGTGGAAAGGGTTTCAGAAATAACACGCAACTCAGAATCCATAAAGAAAATCACGAAAACAATAACTATAAATGCGCCTTGTGTGATTTTGAGTGCACTTCAATGGTCAGATATAATTACCACATGGCGAGGTATCACGACGCTACAAATGAGAAAGCTAAGCAATCTAAATGCGATAAATGCTCCGAACGATTCATCGACCATTATAAAATGATTACGCATTTGAAAGAAGCTCACGGAATACAATTGACTTATGAGTGTAGAGTTTGTAACACCGTTTTACCCTCAAAAAGGAGGTTAAGGGAACACACAACAAAGTTACATCTACAAAATGCAAAATGCGATGTCTGCGGTCCTCAGGAGAGTCAGCATACTCCTGCTAAAGAAGTTAAAAAGAGTTCTCGGACAATAATCAAACTAGAAAAAGAAAACGCTGCAACTTTAATCGAATTCACGACAGCAATACCTTTCACATACGACAAAAacgcaatttttaaatgtttctatTGTTCAGAAAAATACTCGGACGTTAACGACGTGTTACAACACACGGTGATACATATTCCGAACAGACCCTTCTTggtagaaaatattatgaagaacaaaaatttaatcaaaGTTGACATATCAGAGTTGAAGTGCAGAATCTGTGATTCGAAGTATGCAGACATCGACGGTATCAAAGAACATTTGATAGCAGCACACGAGAAGGTATTAGAATCAAACCACAATGGTCTTATACCGTATATTCTCAACAAAGGTGACGGTTTCAAGACCTGCCATAAATGTGAGAGGGCATTCACAAGCTTCATTGAATTGAACAAGCACATGAGTAAACACAGCGGTGTTATCTGTGAAATATGTGGTGCTAGCTTCAGGAAAAATGGGCAGCTGATAAATCACAGAAAGATTCACCAAAACCTTACATATAAATGCGATAAATGTGACACTGTATGCATTTCTAACAGGAGATTAAAATACCACACGATGAAGTATCATGAAACCACAGATGCCAAAAACCCTATAAAATGCCCTCATTGTCCCGAACGATTTCCTGAGTCGTACAAAAAGATTGCACATTTAAAAGAAGCTCACGGAATTTCGTTCACGTATGAATGTACCATTTGCAAGACTTCGTTCACGTCGAAGAGGAGGTTAACCGAACACACAACATTGTTACATATACAgaatattaaatgtgaaatttgCGGCAAATGTTTAAGTACAACAACGTCGTTGAAAAACCATATGCGAACGCACAGTACAGAACGACATTTTTTGTGTGCTCTATGCGATAAAGCGTATAAACAACCGACGAAGCTGAGTCACCACATCAAAGCAGTCCATGGCTACCGTTTTATTTGCTTTAAGTGCGGGCACGCTTTTCCAGGCAAGGATGACCTCACAAGACATAAGACACTTTGTCGTACTGTGAAATCGGAAGTGTCCTTAAAAACTAAGAGTACGGGACATAATGACATGATATGCACTAGCTTGAGTATTAAACTACTCAGCAGTTCCATAGCCCGTCTTGCAATGGTGGAGGTTCCCCGTGAACTACCAGCTAGCTCAGGGGAGCTGCTCGGTGTCACGGAGGTAGAAGATGAAGGTTGTGGAGATGCAGAATGGAACAggaataatagtacattatag
- Protein Sequence
- MNKICSNCSAKKWADEPNGMCCASGSQKDQQSSEEAVSDEKRRSGGLIRSEQGNAATLLEFTTAIPFKYNKGYFKCIYCPDKYTNVYSMLQHAAIHTPNKESLTTAVKTKCMIKVDISELKCRICNMKYPDMDDIREHLVTAHETVFGSGRNGLLPYILSTSNGLMTCHKCEKAFASFRELNNHMSEHSGEICETCGKGFRNNTQLRIHKENHENNNYKCALCDFECTSMVRYNYHMARYHDATNEKAKQSKCDKCSERFIDHYKMITHLKEAHGIQLTYECRVCNTVLPSKRRLREHTTKLHLQNAKCDVCGPQESQHTPAKEVKKSSRTIIKLEKENAATLIEFTTAIPFTYDKNAIFKCFYCSEKYSDVNDVLQHTVIHIPNRPFLVENIMKNKNLIKVDISELKCRICDSKYADIDGIKEHLIAAHEKVLESNHNGLIPYILNKGDGFKTCHKCERAFTSFIELNKHMSKHSGVICEICGASFRKNGQLINHRKIHQNLTYKCDKCDTVCISNRRLKYHTMKYHETTDAKNPIKCPHCPERFPESYKKIAHLKEAHGISFTYECTICKTSFTSKRRLTEHTTLLHIQNIKCEICGKCLSTTTSLKNHMRTHSTERHFLCALCDKAYKQPTKLSHHIKAVHGYRFICFKCGHAFPGKDDLTRHKTLCRTVKSEVSLKTKSTGHNDMICTSLSIKLLSSSIARLAMVEVPRELPASSGELLGVTEVEDEGCGDAEWNRNNSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -