Ppul048948.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:6424465-6433926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.35 58 6.1 1.8 1 23 149 172 149 172 0.92 2 22 0.93 1.5e+02 4.7 0.3 2 23 200 221 199 221 0.94 3 22 0.064 11 8.4 0.0 1 19 269 287 269 289 0.96 4 22 0.00092 0.15 14.2 0.3 2 23 299 321 298 321 0.91 5 22 0.0028 0.46 12.7 3.7 1 23 329 352 329 352 0.96 6 22 1.3e-05 0.0022 20.0 1.2 1 23 358 381 358 381 0.97 7 22 0.00036 0.061 15.4 4.4 1 23 388 410 388 410 0.99 8 22 3.1e-06 0.00051 22.0 3.3 1 23 416 438 416 438 0.99 9 22 0.016 2.6 10.3 3.0 1 23 444 467 444 467 0.95 10 22 0.18 30 7.0 5.6 2 23 474 495 473 495 0.96 11 22 2.5e-06 0.00041 22.2 0.4 1 23 501 523 501 523 0.99 12 22 0.002 0.33 13.1 0.7 1 23 533 556 533 556 0.97 13 22 1.3e-05 0.0021 20.0 1.6 1 23 562 584 562 584 0.96 14 22 0.0045 0.75 12.0 1.2 1 23 638 661 638 661 0.94 15 22 0.0077 1.3 11.3 0.4 1 23 731 753 731 753 0.99 16 22 0.0093 1.6 11.0 0.4 1 23 758 780 758 780 0.96 17 22 0.38 64 5.9 0.7 1 14 785 798 785 804 0.86 18 22 0.08 13 8.1 0.2 3 23 814 835 812 835 0.91 19 22 0.00039 0.064 15.4 1.9 1 23 842 865 842 865 0.97 20 22 0.01 1.7 10.9 0.5 2 23 872 891 872 891 0.96 21 22 8e-06 0.0013 20.7 2.3 1 23 897 919 897 919 0.98 22 22 0.00025 0.042 15.9 1.8 1 23 925 948 925 948 0.97
Sequence Information
- Coding Sequence
- ATGAATAAAATGTGGCGTCAGAAAAATTCTGACTTGTTATTAAAGAAAGAGTTccataaagttttgaatatgatattttatacaAgTTTCAAAAGTATCATCGGTAACCTCAAGCGTAAAGGAGCCAAAACCGGATGGAGTATTACTATTAAGAAAGTTACCCTTCCAAAAACTGAAGAAGATACTACGTCTACAACAGAGATAAAATCTGAGAGAAAAGAAACTAAAATAGCGACAAATAATTTAGTTAAACCACTTAAAGTATCTATTCGAAAACGATCAAAAGATGATTCTCATTTGGATTTTAAGAAGAAATGGTGTAAATGGCCGCCTGAACCAAAAGTAGATCAGATTGTAGAGCTCGACAAGCACCGACAAAACATTCGTACTATCATGAGGAATTCCAACGCTACTCCATTCAAAGCTTATCATGTGGACGACGGCTTTGCGTGCTGTTTCTGTGATAGCTTTTATCAAAACGCAGCTGATTTGAAAAAGCACACTATCGAGAATCACGATTGGAACGAGAAAGACAAGTTCAAAGAAAACTCAATTTCTGTATTAACTTACGTGGTGAAATTGGACATCACAAGACTGTGTTGCGAATTTTGCAACATGGAAATTAATACGCTCGAAGAATTGATTGCACACTTCGAAATTCATGAGGTATTCTTCAATAGAGATATAAATAATCAGATAGTGTGTTTCAAATTCGTCGATGATTCTATACGTTGCATGTTTTGTTGTCAAgaatttagtaactttaaatttcTACTGGAACATATGAACTGTCATTACAGGAACTATGTATGTGAAGATTGCGATAGTGGTTTCATAAACTACAGAATGCTCTTAGCACATTCCGAAGGGCAAGAGCTTACAGTTGGAGAAGTTAAATGCCCTCAGTGCGAGGAAGTATTTTCGTCGCTAACAAAATTCAAAAGACACGAGATACTAGCTCATTCAGGTTTTGATCTCAATACACACAAATGCACACACTGCGGAGAAACTTTTGAATCTGACGAACTCTTGTGTGACCACGTCATAAAATTACACCAAGGACACCATGTGTACATTTGTAGTGGTTGCAAAAAGACTTACCCTACTAAGTATCAATTGGTGACCCATACAAGGAAGGTCCATTTGCACGAGGAGAGAGATTTCAAATGTGATGTTTGTGGCAAATGTTTCTTCGAACGGCAAAGACTTTCGAGTCATATGCAGAGACATACAGAATTACGGAAGTACCAATGCGATGTATGTGCTAAAACTTTCAAGCACAAGAAAACGTTGGTGCGACACATCCAAACTCATAAACTAAAAGGGAAACACAAATGCTTCGCTTGCGATGAAAGTTTCTTTAGAAAGAGTTATCTGGACGACCATACGAAGCAGGTGCATATGAACCAGACCAGGTCTAAATGCGATCACTGCGAGAAGTTCTTCTACAAGAATCAGATGAAGTACCACATGTCTCGACGTCATCCGGAATTCAGTAGGTTCAAATGTGAAGAATGTTCTGAAGTGTTTGCCAACAAATATTTACTAGTTCAGCACATGTCCACTCATGAAGATTTCAAGCCGAAGACTAAGAATTACGAATGCCTAGCTTGTGGCAAAAAGTTTGACAGGAAAATTTACGTTATGAAACACACCCAGCGAGTGCATTTGCTGGAGAAGAATTTCGTTTGCTCTCATTGCGGTAAAAGCTTCGCTGACACGACGACTTTGAAGAACCATACGGCTTTACATTCAGCTACAAATTCACCTGAAAGAGATGAAGAGACACCGCCaaagaaaacatgttataaagaaGACAAAAACGCAAACAGAGATAAGGTATTGAATAACATCAAACAGAttttgatgtggtcgaacgcAACACCGATTTGGCAACACGGATTTGAGGGATACCAATGCGCTTATTGCGAAGATTCATTTATACATCCAAGAAAACTAAAGAAACATACAATTGAAGAACACGACAACTTAAACGAAGCTCGGTTCTTTCAACAGAAAGTGTacaatttcatatttaaattgGATGTAACTGCATTAAAGTGTAAATGCTGCGGGCAAGAATTAGACTCTCTAGAAATGCTTGTAGACCATTTCAAATTCAAGCATAGAAAGGCAATTGATGATAAAATAGTAGACACAATTGTCCCTCTCAAATTTGAGAATGACACGTTCAAATGCGTCACTTGTTTCAATGTTTTCGAGACGTTTGCTTTGTTGCTGGATCATATGATAACACACCttagtaacaaacatatttgCGAGTTTTGCGGAACTGGATTTATATGGAGAAGTACTCTGATCACCCATATGTTGGAGCACGTCGAATCGTCATTCAAATGTACGTTTTGCTTAAAGAAATTTACGACTGCGCAATTGAGAGACGATCACGCCTTCGATTGTACAGACGAGAAGATCATCTGCGACTTCTGTCCCGAAAGCTTTCCAAATTTATACAAGAAGAAGTACCACATGGTCAACGAACACGGTACGCCATCGCAGAACCATGTTTGTAACACCTGTAACAGAAGCTTCCCGGAGAACTATAGATTGATGCTGCACATAAGACGAATGCATTTGAAGGAAAAAAATGAAGTGTGCCCAATTTGCAATAAGAGCTTTTTTGGAGGCATGCAGAGACACATGAAGATCCACTCGGGGGTAAAGGACTTTAAATGTGACGTGTGTTCTAAATTGTTTTCTACGATGAGTAATTTGCAGGTGCATATGTGTATACACACGAATGAGAGGCCGTTCAAGTGCGATGCATGTGGTCAAGACTTTATACAGAAAGTTTGTTTGAAGTCCCACATGCGCGCGAAACATGGCCAGTTAATGTAA
- Protein Sequence
- MNKMWRQKNSDLLLKKEFHKVLNMIFYTSFKSIIGNLKRKGAKTGWSITIKKVTLPKTEEDTTSTTEIKSERKETKIATNNLVKPLKVSIRKRSKDDSHLDFKKKWCKWPPEPKVDQIVELDKHRQNIRTIMRNSNATPFKAYHVDDGFACCFCDSFYQNAADLKKHTIENHDWNEKDKFKENSISVLTYVVKLDITRLCCEFCNMEINTLEELIAHFEIHEVFFNRDINNQIVCFKFVDDSIRCMFCCQEFSNFKFLLEHMNCHYRNYVCEDCDSGFINYRMLLAHSEGQELTVGEVKCPQCEEVFSSLTKFKRHEILAHSGFDLNTHKCTHCGETFESDELLCDHVIKLHQGHHVYICSGCKKTYPTKYQLVTHTRKVHLHEERDFKCDVCGKCFFERQRLSSHMQRHTELRKYQCDVCAKTFKHKKTLVRHIQTHKLKGKHKCFACDESFFRKSYLDDHTKQVHMNQTRSKCDHCEKFFYKNQMKYHMSRRHPEFSRFKCEECSEVFANKYLLVQHMSTHEDFKPKTKNYECLACGKKFDRKIYVMKHTQRVHLLEKNFVCSHCGKSFADTTTLKNHTALHSATNSPERDEETPPKKTCYKEDKNANRDKVLNNIKQILMWSNATPIWQHGFEGYQCAYCEDSFIHPRKLKKHTIEEHDNLNEARFFQQKVYNFIFKLDVTALKCKCCGQELDSLEMLVDHFKFKHRKAIDDKIVDTIVPLKFENDTFKCVTCFNVFETFALLLDHMITHLSNKHICEFCGTGFIWRSTLITHMLEHVESSFKCTFCLKKFTTAQLRDDHAFDCTDEKIICDFCPESFPNLYKKKYHMVNEHGTPSQNHVCNTCNRSFPENYRLMLHIRRMHLKEKNEVCPICNKSFFGGMQRHMKIHSGVKDFKCDVCSKLFSTMSNLQVHMCIHTNERPFKCDACGQDFIQKVCLKSHMRAKHGQLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -