Ppul013943.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982955.1:5566354-5587103[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.21 35 6.8 1.8 1 23 53 75 53 76 0.94 2 22 0.37 62 6.0 2.8 2 23 361 382 360 382 0.95 3 22 4 6.6e+02 2.7 1.0 1 10 401 410 401 413 0.93 4 22 0.0018 0.3 13.2 0.4 1 23 432 454 432 454 0.95 5 22 0.24 40 6.6 0.4 5 23 462 481 459 481 0.94 6 22 0.0029 0.48 12.6 0.2 1 23 649 671 649 671 0.95 7 22 0.00027 0.045 15.8 0.5 1 23 677 699 677 699 0.97 8 22 2.4e-05 0.0041 19.1 0.0 1 23 705 727 705 727 0.97 9 22 0.00016 0.027 16.6 0.5 1 23 733 755 733 755 0.98 10 22 0.0012 0.19 13.9 1.6 1 23 761 783 761 783 0.98 11 22 3.7e-05 0.0061 18.6 1.1 1 23 789 811 789 811 0.93 12 22 3.9e-06 0.00065 21.6 0.5 1 23 817 839 817 839 0.99 13 22 0.0014 0.24 13.6 0.2 1 23 844 867 844 868 0.96 14 22 6.3e-05 0.011 17.8 6.3 1 23 874 896 874 896 0.99 15 22 5.1e-05 0.0085 18.1 0.3 1 23 901 924 901 924 0.93 16 22 0.0053 0.88 11.8 1.7 1 23 930 953 930 953 0.97 17 22 0.00024 0.039 16.0 2.8 1 23 961 984 961 984 0.96 18 22 0.028 4.6 9.5 0.2 2 20 988 1006 987 1008 0.92 19 22 6.5e-05 0.011 17.8 0.2 2 23 1012 1033 1011 1033 0.96 20 22 0.00047 0.079 15.1 0.8 1 23 1042 1065 1042 1065 0.97 21 22 0.15 25 7.2 0.4 2 22 1099 1119 1098 1119 0.94 22 22 0.0073 1.2 11.3 0.7 2 21 1127 1146 1126 1148 0.93
Sequence Information
- Coding Sequence
- ATGGTGGAACATAAAGAAAATTCAAATCACAATTCGGAACAAGATGTTACCTTAAAAGGGGCAGGCAGTTTAGAGCAAAGTCTTGCTGTGGAACGAGTTGTTACTATAGAGCAAAGTAAAGAAGAAAACAATATCATGGAAAATAGTAACAAACAATACTCATGTCaagagtgtaaaaaaatattcttaaacttTGCAGCTCTGGATGATCATTTGAAGTTTCACCACTCACAGaACAATAATGTAGTGGAACAAAGTAGTTCTACTGAACAAAATGTAAATGACGCTATTACTGAACAGATTACTGAACAAATTCCCACCCTAACACAGCATGATActacaaaacaaagtcatacTGAAGAAAAAAATGCTACACAAAGTCCATGTATCACCAATGATAAAAGTGACAATGTGGAACAAAATGGTACTACCGAAAATGTTGCTATAGAATACTGTGTCTCTAGAGACACTGCTGATGAAAGAGTCACTAAATGCCAAAGTGATACCGAAGAACTAAGTGTAGATATAAAGCAAAGTAACACTAGTGATCAGACTAGTAATGTTACTATAgatcataaattaattatagaCCAATTTGACACCACAGAACCTAGAGTCAGTGAATTGCAAAATGATGCCAAAGGACAAAACATCCATAAAGTTCCAGGAGATTCTATAGAGAAAATTATCACCATGGAACAAAATCAAACTCATAAAGAAGGTTACACTTGCGATCAGAGTAACTCTTTAAACATAAATGTCGCTACCAAACAAATTTCCCTTGTAGAACAATGTTCTCTTGACACCATAGAACGAAATAGCATTCAATGTGAAAGTGACAACATAGTTAAAAGACAATCTTATTCTATGAATCAAAGTGACATATTGGGAAACAATACAACCAATGAACCAAGTGACAATATGgaatataacaatttaatagTATTGAGTGACATTGTGGAATCTACTAACTGCATGGAACTAAGTGCCATAACAGAACAGTCTGATACCACAGAACATAGTAGCTCCTTAGAACAAAATGAAATTATGGGCACCATCAAGATAAGTGATAAAATACTGACTTGTCAAgcatgttcaaaaacatttttaagagaaaATGAATTCAATCATCATCAGAAGTGGCACTTGCAAGAAAAGGAATATCCTAATCCATATGTGAAGTTGGACCAAGTCTATCTATTTACATGTGAAGTTTGTAAGAAAGGCTTCATGGAACATTTTAGACAGGACATcaGAGTAAATTCTCAAAACGACAACGAAATAGAAAAGCCATACAAATGCGGTTCCTGCGACAGGAGGTTTGTCTTGAAGTCTACTCTCGAAGTGCATTCTATTCTTCACAAACCATTCACTCACGTGTGCGACTGCGGCATCGGGTACTACAAGAAAAGTGATCTCGACATCCACCGCAGGCTCGTCCATGTCAATGAGACCTCTCAAACCAACAAACCCGTAGTAAAGGTGGAAATTAAAATAGATCCCAAAACTGACTCAGAATTAGAACAGTCTGACAGTGACAGCAAAGAAGAGGATTACAAACCAAGCAGCAAAGTTAGGGCAAGACTAAAGACTAAAACCGAGTACGAAGAAACTGACAACAATGAACCTATACAACCAAACAATTCAGAAAGTTTGCAGGAAGAGGAATACAAATCAAGCACCACAATTGCTCCAAGGCTAAGAGCTGCACTAAAGATAATAAAATCCAGGATCGAACAAactgaacaaaattttaaatacaacaatCAAAATACACAACTGACCAATTCAGAAAGTTTAAAGGAAGAGGAATACAAACCAAACAGCAGAATTGGTCCAAAACTCAAAGCTACACTGATATATAAACAACCCAAGACCAAACAACCGCAACGGAAAAGGATACGTTTCAAACATGAATCTTTCGATCGAAACGATTCAGGGAGGTATATATGCCGTAGCTGTCCGAAAACTTTCGCAGCTGCCAGAAATTTGAAGGATCATTTATATGAACATACTGGAGGACGGCCCTTCGAGTGCGATGAATGCCCCAAGACATTTATGTACCAAAATCTACTGTCGGCTCACAAGGATCGGCATGCAGGCATCAAACGCTACCCCTGCGAGATCTGCGGGAAAAAGCTTGCAAATAAAGCTAGTTTAAAGTTACACATGGTAGTCCACACGAAAGAGAAGCCATACGAGTGCAAACTGTGTCCGAGTCGATTCACACAAACGGGCGCGCTCAAGCTCCACATGTTGCGGCACACGGGGAAGAAAGATCACAAGTGCGACCTTTGTGACAAGCTATTTTTTACGGAAGATGCGATGGTGCGTCACAGGCGGGTGCATACGCGGGAGAAACCCTACGAGTGCAAGTATTGTAAGAAGTCGTTTTCGGACCCATCGGCGCGTAGGCGGCACGAGGTGCTTCACACGGGAGACAAGCCCTACCGCTGCCAACTGTGTCCGAAAGCCTTTGCCGACAACAGCGCGCTTCACGTCCATGTGCGACGTCACGCCGGCGTGCGCTACCCCTGTCCGCTCTGTCCCAGAGTGTTCAAGGGCCGCGACGGTAGGCTTGCGCACATTAAAATCACCCACCACGATACCGGCGAGAGGTACCAATGCCACCACTGCGACAAACAGTTCACCTTTAAAAATTACCTCGTCATCCACATGGAGAAGCACTTCCCCGGAGCTTACACTTGCGATATCTGCGGCAAAATTTTCGACCGTAAAGTATATCTTAAAGGTCACGTCTCGTTAACGCACTTAAGAAATTACAAGTACAAATGTCTTACCTGCGGTCTCAAGATATCCCATAAGTATAAATTGTCAGACCATATGGCGAGAGTTCATAGTAAAGTTAAGGAAATGAATTACGAGTGTGACCACTGCCATAGGACTTTCTATAATAAGGCTGATGTGTTAAAACACATAGTCCGTATACATTTACGTATACAGTGCCCTTTGTGTAAAAAAGTGTTTGTCTGCGCTGAAGCATTGAGACGTCACGAAGCCAAGGGTTGTATGCAGTGTCCTGTGTGTGACAGAGCGTTTAGGTCTCGTAAACTATTGGAAGAGCACAGCAATGTTCATGTAGCTGCAAGTGAAAGACAAGTGCACGAATGCACAGTTTGCTGGAAGCGCTTCCCCGTTCTGAAAAGGTTGGAGGTACATATGCGTTCCATGCACAACGAACAATCTGAATTTTATTGTGACCACTGCAGTACGAAGCGACACTCAAAGAATGCAATCAGGGTTCATATCTGGGACAAACACATGCTGAGCTTGTACTGTGATGTTTGTATGAAGCGTTTCTATAGTGAAGCTGAGTTCCGTGATCACAAGAGGACTCCCTGTGTTCAGAAACAGTTGGTTTGTGAAATTTGTGAACAAATGTTTCCAACGAACAGTCGCTTACTTGCACATCTAAAATGTCATGGCCCGAAGAAATATGAATGCGATACGTGCAAGGGCACAGATTTGATAACAGTTAGTTTGTGCGACGACGAGCTGCGTTGCCGCGCCGCGCCGGGCGCGCCGCTCGATACGCGCGCGCCGTGCGTCCCGCGCGGCATCGACCCTCTGCCAGTCTTCCCCTGCGACGAGTAA
- Protein Sequence
- MVEHKENSNHNSEQDVTLKGAGSLEQSLAVERVVTIEQSKEENNIMENSNKQYSCQECKKIFLNFAALDDHLKFHHSQNNNVVEQSSSTEQNVNDAITEQITEQIPTLTQHDTTKQSHTEEKNATQSPCITNDKSDNVEQNGTTENVAIEYCVSRDTADERVTKCQSDTEELSVDIKQSNTSDQTSNVTIDHKLIIDQFDTTEPRVSELQNDAKGQNIHKVPGDSIEKIITMEQNQTHKEGYTCDQSNSLNINVATKQISLVEQCSLDTIERNSIQCESDNIVKRQSYSMNQSDILGNNTTNEPSDNMEYNNLIVLSDIVESTNCMELSAITEQSDTTEHSSSLEQNEIMGTIKISDKILTCQACSKTFLRENEFNHHQKWHLQEKEYPNPYVKLDQVYLFTCEVCKKGFMEHFRQDIRVNSQNDNEIEKPYKCGSCDRRFVLKSTLEVHSILHKPFTHVCDCGIGYYKKSDLDIHRRLVHVNETSQTNKPVVKVEIKIDPKTDSELEQSDSDSKEEDYKPSSKVRARLKTKTEYEETDNNEPIQPNNSESLQEEEYKSSTTIAPRLRAALKIIKSRIEQTEQNFKYNNQNTQLTNSESLKEEEYKPNSRIGPKLKATLIYKQPKTKQPQRKRIRFKHESFDRNDSGRYICRSCPKTFAAARNLKDHLYEHTGGRPFECDECPKTFMYQNLLSAHKDRHAGIKRYPCEICGKKLANKASLKLHMVVHTKEKPYECKLCPSRFTQTGALKLHMLRHTGKKDHKCDLCDKLFFTEDAMVRHRRVHTREKPYECKYCKKSFSDPSARRRHEVLHTGDKPYRCQLCPKAFADNSALHVHVRRHAGVRYPCPLCPRVFKGRDGRLAHIKITHHDTGERYQCHHCDKQFTFKNYLVIHMEKHFPGAYTCDICGKIFDRKVYLKGHVSLTHLRNYKYKCLTCGLKISHKYKLSDHMARVHSKVKEMNYECDHCHRTFYNKADVLKHIVRIHLRIQCPLCKKVFVCAEALRRHEAKGCMQCPVCDRAFRSRKLLEEHSNVHVAASERQVHECTVCWKRFPVLKRLEVHMRSMHNEQSEFYCDHCSTKRHSKNAIRVHIWDKHMLSLYCDVCMKRFYSEAEFRDHKRTPCVQKQLVCEICEQMFPTNSRLLAHLKCHGPKKYECDTCKGTDLITVSLCDDELRCRAAPGAPLDTRAPCVPRGIDPLPVFPCDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -