Basic Information

Insect: Plagodis pulveraria
Gene Symbol: -
Assembly: GCA_963890685.1
Location: OY982977.1:16008351-16020449[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.4e-06 0.0012 20.8 1.5 1 23 162 184 162 184 0.98

2 14 0.00014 0.023 16.8 1.3 1 23 190 213 190 213 0.95

3 14 5.7e-06 0.00095 21.1 1.0 1 23 219 241 219 241 0.98

4 14 4.9e-05 0.0082 18.2 2.5 1 23 246 268 246 268 0.97

5 14 6.3e-06 0.001 21.0 3.7 1 23 274 296 274 296 0.99

6 14 2.9e-06 0.00048 22.0 2.1 1 23 302 325 302 325 0.95

7 14 2.8e-05 0.0047 18.9 3.8 1 23 331 353 331 353 0.97

8 14 8.1e-07 0.00013 23.8 1.1 1 23 359 381 359 381 0.98

9 14 5.8e-05 0.0096 17.9 2.1 1 23 387 409 387 409 0.99

10 14 2.2e-07 3.6e-05 25.6 0.6 1 23 415 437 415 437 0.98

11 14 1.2e-06 0.00021 23.2 3.4 1 23 443 465 443 465 0.98

12 14 0.069 12 8.3 3.0 1 23 471 490 471 490 0.95

13 14 8.4e-07 0.00014 23.7 0.8 1 23 496 518 496 518 0.98

14 14 0.00043 0.072 15.2 4.3 1 23 524 546 524 546 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.4e-06	0.0012	20.8	1.5	1	23	162	184	162	184	0.98
2	14	0.00014	0.023	16.8	1.3	1	23	190	213	190	213	0.95
3	14	5.7e-06	0.00095	21.1	1.0	1	23	219	241	219	241	0.98
4	14	4.9e-05	0.0082	18.2	2.5	1	23	246	268	246	268	0.97
5	14	6.3e-06	0.001	21.0	3.7	1	23	274	296	274	296	0.99
6	14	2.9e-06	0.00048	22.0	2.1	1	23	302	325	302	325	0.95
7	14	2.8e-05	0.0047	18.9	3.8	1	23	331	353	331	353	0.97
8	14	8.1e-07	0.00013	23.8	1.1	1	23	359	381	359	381	0.98
9	14	5.8e-05	0.0096	17.9	2.1	1	23	387	409	387	409	0.99
10	14	2.2e-07	3.6e-05	25.6	0.6	1	23	415	437	415	437	0.98
11	14	1.2e-06	0.00021	23.2	3.4	1	23	443	465	443	465	0.98
12	14	0.069	12	8.3	3.0	1	23	471	490	471	490	0.95
13	14	8.4e-07	0.00014	23.7	0.8	1	23	496	518	496	518	0.98
14	14	0.00043	0.072	15.2	4.3	1	23	524	546	524	546	0.98

Sequence Information

Coding Sequence: ATGACTAATGCATACGctacaaataatttatgtcGCTGTTGCCATGCAGAGGGAATTTATAAAAGTTTGGGATTCACTTGTCTGAACAATGGTAAAGAAGAAACATATTCGGTTTTGTTACGCGAAACTTTTGATATTACTATTATTCCGAAATCCGACGACATGAGTGATTACAGCATCTGTGACATATGCGAGCCACGTGTCCTGGATGCAGCACTCTTCAAAAGGCAGGTGCTGGAGTGTGAGAGGAAGCTGTCATCTTCTCTTTATACTCTGGAACCCAAAGAGGAACTGGACCAAGATGATCAGCCCAATCTGGAAGACCCATCCTTGCAGATATTCGAGGACGGAGCCGAAGATTTGGATGATCAGCCCCTCTCCACACTGAGGTCCCCGTCTCCCACTCTCGAAAATCATCACTGGAATACACCGGATAGTGAAGatgATTGTACAAAACTTGAAAACATAACCAAATCGAAGAAGTATTCATGCAGCTACTGCGAAAAGAGGTTTACTTACAATGGATCCTTGGAAATGCATCTGAAACTGCACACCGGTGAAAAAACCTACCCGTGTCTACTCTGCAACACCGACTTCACGAACAACTATGAACTAACCAAACACTACACTTCAACACATTCAGACGGTGACCAATATTCATGCACAATATGTACAAAAGCATTTGAAAAAGCTCGACTCTTgaagaaacacttaaaaatccaCTTCGAACAAAAACACATCTGCACCGTATGCTCCAAAGAGTTCCAACGTAAAAAAGGATTAAAGGAACACATGAAGATTCACACCGGCGAAAGGAAATTCCAATGTGACATCTGTCAGAAATCTTTTGGACATAACCAAACGTTGAAATCCCACATGTATACCCACACAGGGGAACGGCCTCATGTGTGTGACGTTTGTGGGAGAAGATTCCCACAACGGACACATTTGAAAcgacatatatacataatacacaATCAAATAAAACCTCATTCGTGTAGTATATGTCAAAAGAAGTTTTCAAGTAAAAGTTATCTGTCTATACATGAGAGACAGCATACGGGGGAAAAACCGTATAGCTGTCAAGTGTGCAATAAGACTTTCACAGCGAATACAACTCTAAAAGTTCATATGAGAGTCCATACCGGTTTAAAACCGTATTCTTGTACATTCTGCGATAGACAATTCGCTCAAATGGCAAGTTTTAAACTGCACCAAAGAACACATACCGGTGAAAAACCTTACTCGTGCAAGGTCTGTCGAAAACCGTTTTCGGATAACGGTTATTTGAAAATCCATATGCGTGTGCACTCCGGGGAAAAACCTTATTCGTGTGAAATTTGCAAACGTTGCTTCCGTGAAACTGGACAGTTGAAACGGCATATGAGAGTTCACACGGGCATAAAACCTTATACGTGcaaaatttgtaataaacaaaTAGGCAACCTGTCCAAACATATGAGAGTGCATTCAGAAGAGAAACCGTTCAACTGCAATATATGTAACAAACAGTTTTCTATTAATGGCAATCTTAAACTGCATATGCGTGTACATTCCGGGGAAAAACCGTATTCTTGCGAGGTATGTTTCAGTCAATTTACACAAAGTTCTGGCTTGAAAAGGCATAGGTGTACACATGAAGTTAGTGGATGTTGA
Protein Sequence: MTNAYATNNLCRCCHAEGIYKSLGFTCLNNGKEETYSVLLRETFDITIIPKSDDMSDYSICDICEPRVLDAALFKRQVLECERKLSSSLYTLEPKEELDQDDQPNLEDPSLQIFEDGAEDLDDQPLSTLRSPSPTLENHHWNTPDSEDDCTKLENITKSKKYSCSYCEKRFTYNGSLEMHLKLHTGEKTYPCLLCNTDFTNNYELTKHYTSTHSDGDQYSCTICTKAFEKARLLKKHLKIHFEQKHICTVCSKEFQRKKGLKEHMKIHTGERKFQCDICQKSFGHNQTLKSHMYTHTGERPHVCDVCGRRFPQRTHLKRHIYIIHNQIKPHSCSICQKKFSSKSYLSIHERQHTGEKPYSCQVCNKTFTANTTLKVHMRVHTGLKPYSCTFCDRQFAQMASFKLHQRTHTGEKPYSCKVCRKPFSDNGYLKIHMRVHSGEKPYSCEICKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSEEKPFNCNICNKQFSINGNLKLHMRVHSGEKPYSCEVCFSQFTQSSGLKRHRCTHEVSGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -