Ppul049032.2
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:7366852-7379331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 47 0.022 3.7 9.8 4.6 1 23 115 138 115 138 0.96 2 47 0.18 30 6.9 1.0 2 23 167 189 166 189 0.95 3 47 0.036 6.1 9.1 1.2 2 23 212 234 211 234 0.93 4 47 0.00014 0.024 16.7 0.2 1 19 239 257 239 258 0.96 5 47 1.9e-05 0.0031 19.5 1.0 1 23 266 289 266 289 0.96 6 47 0.0055 0.92 11.7 0.5 1 23 294 317 294 317 0.97 7 47 0.0093 1.5 11.0 4.9 1 23 326 349 326 349 0.97 8 47 0.46 77 5.7 0.3 2 23 356 377 356 377 0.96 9 47 0.26 44 6.4 0.2 1 23 418 440 418 440 0.95 10 47 0.17 28 7.0 2.4 2 23 509 531 508 531 0.95 11 47 0.011 1.9 10.8 7.4 2 23 537 558 536 559 0.94 12 47 0.26 43 6.5 1.9 1 23 563 586 563 586 0.97 13 47 0.25 42 6.5 1.4 2 23 589 611 588 611 0.91 14 47 0.19 31 6.9 0.1 2 19 618 635 618 638 0.88 15 47 0.03 5 9.4 3.9 1 23 688 711 688 711 0.96 16 47 0.24 40 6.6 0.6 2 23 742 764 741 764 0.96 17 47 0.024 4 9.7 2.9 1 23 785 808 785 808 0.96 18 47 0.01 1.7 10.9 0.8 1 23 813 836 813 836 0.94 19 47 0.00037 0.062 15.4 0.1 1 23 843 866 843 866 0.95 20 47 0.02 3.3 10.0 0.1 2 23 872 894 871 894 0.93 21 47 0.00073 0.12 14.5 2.4 1 23 898 921 898 921 0.97 22 47 0.0044 0.73 12.0 0.9 2 23 928 949 927 949 0.96 23 47 0.034 5.7 9.2 3.0 1 23 984 1006 984 1006 0.97 24 47 9.6 1.6e+03 1.5 0.1 3 23 1032 1053 1030 1053 0.92 25 47 0.24 39 6.6 0.1 2 23 1074 1096 1073 1096 0.94 26 47 0.23 38 6.6 0.3 1 23 1101 1124 1101 1124 0.97 27 47 0.001 0.17 14.0 0.7 3 23 1131 1152 1129 1152 0.95 28 47 2 3.4e+02 3.6 0.2 2 21 1185 1204 1184 1205 0.94 29 47 0.37 62 6.0 6.4 1 23 1249 1272 1249 1272 0.96 30 47 0.29 49 6.3 0.1 3 23 1301 1322 1299 1322 0.95 31 47 0.061 10 8.4 0.0 3 21 1348 1366 1347 1369 0.90 32 47 0.00071 0.12 14.5 0.1 2 23 1375 1397 1375 1397 0.96 33 47 0.0015 0.25 13.5 2.7 2 23 1402 1424 1401 1424 0.95 34 47 0.018 3 10.1 0.7 1 23 1429 1452 1429 1452 0.96 35 47 1.7e-05 0.0029 19.6 3.9 1 23 1456 1479 1456 1479 0.97 36 47 0.014 2.3 10.5 0.2 2 23 1486 1507 1485 1507 0.96 37 47 1.4e-05 0.0024 19.9 1.2 1 23 1513 1535 1513 1535 0.98 38 47 0.79 1.3e+02 4.9 0.2 1 23 1583 1606 1583 1606 0.93 39 47 0.17 28 7.0 0.2 3 23 1638 1659 1638 1659 0.97 40 47 0.054 9.1 8.6 2.0 2 23 1682 1703 1681 1704 0.94 41 47 0.0032 0.53 12.5 1.2 1 23 1709 1732 1709 1732 0.97 42 47 0.26 43 6.5 0.2 1 23 1737 1760 1737 1760 0.91 43 47 0.00093 0.16 14.1 0.8 2 23 1766 1788 1765 1788 0.94 44 47 0.0005 0.083 15.0 0.1 2 23 1796 1818 1795 1818 0.97 45 47 0.35 58 6.0 0.0 2 23 1825 1846 1824 1846 0.95 46 47 1.5e-06 0.00025 22.9 0.7 1 23 1852 1874 1852 1874 0.95 47 47 8.5e-06 0.0014 20.6 1.9 1 23 1880 1903 1880 1903 0.97
Sequence Information
- Coding Sequence
- atgtattcgctaCAGTATCTTATAAACTACTATGATAAGAGATACAGAAGAACGCATCTCGTTTCAGATCGCGCCAAAACCGAAGGCAGACAAAAGCGATCACGGCACTCTGACAAACAGACGACCATCATACCTAAATGCGAAATCAAGATTGAGAAAAATGACTTGATCGCAGACCATGAATTCGACAGTCTTGTAGTATTTAAACCGGCACTAAAAAAGAATCTGAAATATAAGGATGACCCTCCTGTAAAGGTTCTACAATGTCTCAAAGTCAGGGAAAACATAGCATGTTTGCTTAACAACTCTACAGTTATACCTTTTTCCCATGCAAAGAGTAAATTCAACTGTTTTGTATGTCATGAAGGGTTCGATCGGTGTGATACTCTACAGGAACACTATAGGAATCAACACTccaaacataaatttaaatcttcagacaatattatgaaaaggatcaataaaaatacttcactGAAACTCGATATTGCTGATCTAACTTGTAAACTTTGCCACCAAAATATATCTGATTTAAGAACTCTTACTGACCATCTTATATCAGATCACAGTGTCGAATATGACAGGACTGTTATTGATATCGTACAACCGTTTAGACTTCGTGACGGTGATCTCAAATGTCATGTTTGTGAcgaaaagtttatatatttcatcaaattagtAACTCATTTGAATGACAATCACGAGGATAAGAAGTATATGTGTGATATATGCGGGAAGTCGTTTAAAGATTTGAGTTCTTATAATCTTCACGGATGGCAAGTGCACGGGCCTGGGTTTAACTGCGAGGACTGTGGCAGGCGATGCTCTAATGCTTCTCTACTCAGAGAACACATGGCGAGCACTCATGGCAAAGGAACATTCAAGTGTAACGAATGCCCCGCAGAATTCACGTCTGTATACAAACGGAAAAAGCATATAATTTCTGTACACAAAGCCAAAGAAGTGCCAGCTTCCTTCAAGTGTCCTCACTGCGATAAAGTTTTCACTTGCACATCGCAGCGAAACGTTCACGTTAGGAAAGTGCATTTGCAGGAGAAAAACGAGGTGTGCCCTATATGCCAAGCGCAGCTATTTAATAAGACCAGGTTGAATCTTCACATGGTTAAACATCTGAGGGAAAGAAACCACGTTTATTCTACGCTGGTACGGAAACTAAGCAAAGAACGAAGAAGAAGCCTCGTCAATTTGTTCAACTACACAACTATAATTCCTTTCAAATATCGTGGAAAATATTTGTGCTTTTTCTGTGGCATTGATGTGGAGAACAGAGAGCAATTGATACAGCACAGCCAAATGCATTTACCATGTCGCATGGATGATTTCTCGCTGAAAAATGCCAGAAAACATGTCAGTATTGATGTGTCGGATGTAGGATGCAAAGTTTGCTttgaaaagtttgaaaataTCCATGATATAGGATTTCATTTGGCGTGTAAACATGAACAGCCCTATGACGGGGATGCTATGGCTGATTTTTTTGCAACTTACAAGCTCATTGATTTGAAATGTCTCGTTTGCGGCGAGGATTTTAAATGTTTCAAAAACCTTGTCCAACATATGAATAATAAACacctaaatatgtatttagAATGTGACCATTGTCATTCAAAGTTTAATAGAAAGCAGGATCTGCAGATGCATTTAAGGAATCACCATAGGGACGAGTATCAGTGCTCCAAATGCATGATACTGTTTGATTCGCATGCAGAGTTAATTAGGCATAAGAATAAGTCCCATATATCTCAGTGCAATCTATGTTTCAAGACGTTTTCCTCATTGGAAATAAGattaaaacatatgaaaaatgAACATAATATAGCGGCTGGCGGTACTTGTGGTTTTTGTAGCAAAGTTTTCAGTACAAAATATGGCATTTTAGACCATGCAGCTAAGTGTACAGCTGTAGATGAAGGCAAAATCGAAATAGCTGCGGAGACAAATAATGATGCAGCCGCATACGATGTTAGACCCGTAAGAACAGACCTTGCGTATATCTTTAACAACACTACTGTTATGCCTTTTAAAGTTAGTCATGGAAAATTTCGGTGCTTTTATTGCACGAATGAATTTGACAAATGTGAAAATCTCAAGCGTCACACCAGCGTTGCACATCCAGTTTGTGATGTGAAATTTAAATCGATGAAGTTAAAAAGTCTGACTCCTTCGAAAGGAATGAAGATCAAGATTGATACGTCATTGCTACAATGCAAGTTGTGTTCAGAACATGCAACTGatattaagaatttagtgactCATTTAGACACAGAACACAAAACGAATCTTGCCAAAATCGTTGATTACTTTCAACCTAATAAACTTATACACGATAAGTTTCCGTGCACTGTGTGTGGTAATGAGTTTAGATACTTCCACACGCTGCTTAAACACTTTAATAAGGAACATACTGGAAATAAGTTCCTTTGCGTTTACTGCGGCAAATCGTACCCGAACAGCTGTATCTTGCAATCTCACGTGAGAATGGTTCATAAACAGCAGAACATTCGTTATAACTGTGCTTTCTGTGAACAAGGGTTTGTGAGGAATAGTGATTTGAATAATCACATGGGCAGTGCACACGGTAAAAAGATCATTAAATGTCCCCAGTGTCCGGAAAAATTTGTCTCTCAATACGCCAAGACGTTGCATTTAGTAAAAGCTCACAATGGGGGTCACGAATGTACATATTGCGGCGTAGTTTTTCCAAAACATAGTCGTTTGACAGAACATGTCAGAAGGTTACATCTAAATGAAAAGACTGTGGAATGTATGATTTGTAGGAAAAAATTCTTTGATCAGCGAAGATTGAGAAACCATATGGTGATTCATTTAGATCATAAGGACTCCACCGCTAACGCAGATAAGCGGCGAGAAAACTTGAAAGTACTATTCAATCACACATCCATAGTACCATTCAAGTGGAAGTCCAAGTATGCCTGTTACTATTGCAGCGAAAAATTTACTGTTTATACCAAGTTTATAAAGCATACGAAATCCCACGGAACATGCTGTAGAAAAACTTTAAAACGGCTCAAAACCAATAGCGAGATCAAATTGGACGTATCGGAAATTATATGCGAGCTATGTCAAAAAGAGATGAAAAGCCTCGACAAAGTCATCGATCATTTGATCATCAGCCACTGCAAAGAATACGATAAGAAAGTCGATATACATTTTCAAGAATACAGGCTTAGTGATTTGAAATGCCTGCAATGTGAGCAATCTTTTACAAACTTTGCAGTTCTGGCTGGACATGTGAACAGTGCTCATTCTAAGAATCGTTTTGAATGTGATGCTTGCGGGTCTGTTTTCTTCAAGGAAAAAAACATAGCGCTCCACATAAAGAGGTATCATGACAAGGCTGCAATTATTTGCAAACTGTGTCAGAAAGGATTCGTCGATAAAGCTCGGTTGAAGAGACACTACATCCGTAAGCACACCGAGAACGAAAGTCGAGGTAGTCAATGCGATGTGAAATTTCAAATTGCGGGTAGTCTGGAAAAACATACTGGGAAGGAGTACATAGTTCAGTCCAAGTGCCGCAATTGTTTCAAAGAATTGATATCAGCAGAGGAAATGAAACTCCATATGTCCAGTTGCAATGCCCTATCTAACACGACCGCAATCTCACCAAGTAAAAGAAACAATCACTGTAACAAAATAAGGCGAAACATTCAATGCGTTTTGAATATGTCCACTGCAATTCCATTTAAGTTTAAATCAAAATTCAGCTGTTTCTATTGTTCCCACTGCTGCACCCAATTTGACGATCTGGCAATACACACCCGAGCGGAACACCCAGTATGTGAGCTGAAATCGAAAGCGCTACGGGCTTGCAAAGGCGAAAAGGCTTGTGTCAAGTTAGATATAAACGGTATCGCCTGCAAACTTTGTAATCAATCGACATCTGACTTGACCACATTTGTAGACCACGCCATCACAGAGCACGGAGCGGATTACGATAAGTCTATACCGTTCAAAGATTGCTTTGAAACATTTCGTATTACTCAGGGGAGTATTTTGTGCCCGGAATGTCAGGAGCCTTTTCCGTACTTTGGAACTTTGCTGAGGCATTTGGGAGCTGAACATAACCACCATAAAGCTGTTTGCGCGTACTGCGGCAGAGGTTTCCGGAATACGACTGGTCTAGCCATGCACATACGTAACTCCCACACTGGCATGTGTGAATGTACGATATGTAATGCCAAGTGTAAGAACTCTGACGCTCTTGCGCGCCACATGGCTCGTTACCACGATGCCAAAGAGTTTAAATGTCCTCAGTGTCCTGAGCAATTCGAGACAATGTACAAGAAACAGAATCATCTGATCAAAGCACACAATATTGGGCATAAGTGCGCGTACTGTGGGAAAATGTTCACAAGGAATTCGTTTATGATGAACCACATTAGGAGGACACATCTTAAAGAGCGTACCGTGCCATGTTCGGTCTGCAATTTGAAGTTCTTTGATAGTTATCAGATGGCTATGCATATGGTGAAACATGAGGGTGTTCGGAGGTTCAGATGCGATGTCTGTGGGAAGTCTTTCTTGAGATTGAGGAACTTGAAATCTCACATGGATACGCACAAAAAGAGTGCAAAAACGAATACAGTGGAGGACAAATATAAGAAAATGGAAATTGCCCGTAAGTTATTAATCAAACGTCGGAATATAGAGTACGTATTACAGTACAGCAACGTCACACCTTTCATGTGGCACAAGTCTAAATACAGGTGCTTTTACTGTACCGAGCCAATGAGGGACCCTGAGGTCTTGAGGCAGCATACTAGCGAAGCCCATGACAACGCAAACCTCGAGCTCATAGTATACGACAGAACTAAAAACAACAGAAACAAAGACGCAGCCATAAAGATAGACGTCACTGATATCGGCTGCAAACTTTGCTCGCAAGCAACTAACTCTTTGGAAGAGTTGATACACCATATCATAATAGCCCACGACGCTGAATATGACGTCAGTGTTCCCAACTGTCTTCTACCCTTTAAACTGGACAAGGATCAACTCACATGCGCAACTTGTAACGAGAAATTCGTATTCTTCGAGTATCTGCTCAGGCATGCCAATAAACACCATCTCTTCCATCATTACATTTGCGATGTGTGCGGGGTCAGTTTCCAAGGAGAGAATCATTTGAAGATGCATTACAGGTACTACCACAGAGAAGGTGGGTACACATGTGAATACTGCGGAGTTTCCCTTGCAACGCTATCTAAGAAGCTGTTGCACGAGAAGAATATACACGAAGTCAATCTTTCAACTTGTCCGCATTGCCCAGAAACTTTTAAAAGTCCGTATCTCAAAAAGCTCCATATGGCTAATATACATGGAGTGGAAGAACTTAAAATCAAATGTCCATACTGTCCCAAAGTTTATCCACAGGAAAGCATAATGTCTCGACATATGAGACGTGTTCATTTGCGAGAGAAGAACGTCGAGTGTGAAGTGTGCGGGGATAAGTTCTTCGGACCTTACGACGTGAAATTGCACATGGTTAAACACAACGGTGATAAGAAGTTTGTCTGCAATGTGTGCGGAAAGAAATTTTCCAAGAAAAGTAACCTGAATTCTCATGCAATCCTTCATACGAGAGAGAAGAATTACAGTTGCAGTATGTGTGATAAAGCCTTCGCTCATCAGAACACATTGAAGGTCCATATTAGAAATAGACATCAGCAGTTCGACGACGGGTTCAATATTTTGGAAGATTTAGTCACCAGTAATATGCCTGACGATTTGGAGCATATGGGAGTTATACAAGAACAACTTGAAAGTGCAGAAACGATGGCTGATcagtatattgtaaaataa
- Protein Sequence
- MYSLQYLINYYDKRYRRTHLVSDRAKTEGRQKRSRHSDKQTTIIPKCEIKIEKNDLIADHEFDSLVVFKPALKKNLKYKDDPPVKVLQCLKVRENIACLLNNSTVIPFSHAKSKFNCFVCHEGFDRCDTLQEHYRNQHSKHKFKSSDNIMKRINKNTSLKLDIADLTCKLCHQNISDLRTLTDHLISDHSVEYDRTVIDIVQPFRLRDGDLKCHVCDEKFIYFIKLVTHLNDNHEDKKYMCDICGKSFKDLSSYNLHGWQVHGPGFNCEDCGRRCSNASLLREHMASTHGKGTFKCNECPAEFTSVYKRKKHIISVHKAKEVPASFKCPHCDKVFTCTSQRNVHVRKVHLQEKNEVCPICQAQLFNKTRLNLHMVKHLRERNHVYSTLVRKLSKERRRSLVNLFNYTTIIPFKYRGKYLCFFCGIDVENREQLIQHSQMHLPCRMDDFSLKNARKHVSIDVSDVGCKVCFEKFENIHDIGFHLACKHEQPYDGDAMADFFATYKLIDLKCLVCGEDFKCFKNLVQHMNNKHLNMYLECDHCHSKFNRKQDLQMHLRNHHRDEYQCSKCMILFDSHAELIRHKNKSHISQCNLCFKTFSSLEIRLKHMKNEHNIAAGGTCGFCSKVFSTKYGILDHAAKCTAVDEGKIEIAAETNNDAAAYDVRPVRTDLAYIFNNTTVMPFKVSHGKFRCFYCTNEFDKCENLKRHTSVAHPVCDVKFKSMKLKSLTPSKGMKIKIDTSLLQCKLCSEHATDIKNLVTHLDTEHKTNLAKIVDYFQPNKLIHDKFPCTVCGNEFRYFHTLLKHFNKEHTGNKFLCVYCGKSYPNSCILQSHVRMVHKQQNIRYNCAFCEQGFVRNSDLNNHMGSAHGKKIIKCPQCPEKFVSQYAKTLHLVKAHNGGHECTYCGVVFPKHSRLTEHVRRLHLNEKTVECMICRKKFFDQRRLRNHMVIHLDHKDSTANADKRRENLKVLFNHTSIVPFKWKSKYACYYCSEKFTVYTKFIKHTKSHGTCCRKTLKRLKTNSEIKLDVSEIICELCQKEMKSLDKVIDHLIISHCKEYDKKVDIHFQEYRLSDLKCLQCEQSFTNFAVLAGHVNSAHSKNRFECDACGSVFFKEKNIALHIKRYHDKAAIICKLCQKGFVDKARLKRHYIRKHTENESRGSQCDVKFQIAGSLEKHTGKEYIVQSKCRNCFKELISAEEMKLHMSSCNALSNTTAISPSKRNNHCNKIRRNIQCVLNMSTAIPFKFKSKFSCFYCSHCCTQFDDLAIHTRAEHPVCELKSKALRACKGEKACVKLDINGIACKLCNQSTSDLTTFVDHAITEHGADYDKSIPFKDCFETFRITQGSILCPECQEPFPYFGTLLRHLGAEHNHHKAVCAYCGRGFRNTTGLAMHIRNSHTGMCECTICNAKCKNSDALARHMARYHDAKEFKCPQCPEQFETMYKKQNHLIKAHNIGHKCAYCGKMFTRNSFMMNHIRRTHLKERTVPCSVCNLKFFDSYQMAMHMVKHEGVRRFRCDVCGKSFLRLRNLKSHMDTHKKSAKTNTVEDKYKKMEIARKLLIKRRNIEYVLQYSNVTPFMWHKSKYRCFYCTEPMRDPEVLRQHTSEAHDNANLELIVYDRTKNNRNKDAAIKIDVTDIGCKLCSQATNSLEELIHHIIIAHDAEYDVSVPNCLLPFKLDKDQLTCATCNEKFVFFEYLLRHANKHHLFHHYICDVCGVSFQGENHLKMHYRYYHREGGYTCEYCGVSLATLSKKLLHEKNIHEVNLSTCPHCPETFKSPYLKKLHMANIHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCNVCGKKFSKKSNLNSHAILHTREKNYSCSMCDKAFAHQNTLKVHIRNRHQQFDDGFNILEDLVTSNMPDDLEHMGVIQEQLESAETMADQYIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -