Ppul040702.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- clz9
- Assembly
- GCA_963890685.1
- Location
- OY982969.1:27233610-27234689[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-08 3.4e-05 25.1 0.1 2 39 15 52 14 57 0.93
Sequence Information
- Coding Sequence
- atgGTACGAtactataaaagaaaaactactGATAAATACTCTCAAGAAACTCTACGCGAAGCAGTCAAAACAGTACGGGAGCAGCATATGACAGCTTTGAAAGCATCCAGAGTTTACAATGTTCCTAGAGCAACTATAATTTCACACGTAAATGGTGTTCGTGGTGTAAAATCGAAATCTCATGGGAGACCAACAGTTTTTTCAGAGGAGTTTGAGAAGAAAATGGCTTCAATGCTACATATAATGGAGCGCCACGGATTTGGACTAACCCAAAGAGAAATACGAGCTCTAGTCGGACAATATGTTCGTCGAAATAATATGGACACCCCTTTTACTAATGGGATTCCTGGGGAGGAGTGGATCAGAGCCTTCCAAAGAAGAAATAAGTTGTCATTAAAAAAACCACAATCAGTAGAAATTGCAAGAAAGAAAGCCGCCGATCCCTTTGTTATCAATGAATTTTATGATTTACTACAAGGAATTATACAGGAGCAAAAATTAGAAGGCGATCAAATATGGAACCTGGACGAAACGAGTTTCTGCCAAGACCCTGGAAAGTCTAAGATAGTAGGACTAATAGGTTTTCAAGCCACTAGGACCACAAGCTCACCAGGTCGAGATAATACAACGGTGTTATTCGCTTGCAATGCCTACGGCGAAAAGGTTATgcctttgattatttttaaaggtACTTATCTCTGGAACAGTTGGCTACCTGACGATGATTCAGGTAACCAACTAGCCGTTGCTTCTACTTCGAAAGGCTGGATGGAAGCTTCCGTTTTCGAAAGCTacttttcaaatgttttaattCCACAAATTTGCAAAACGGGCAAACCGCAACTAGTTATATATGACGGTCATTCTACGCATCTCGACTTAAATGTCATTATGAAAGCACACGATAACAATATTACCCTGCTAAAATTGCCGCCACATTCGTCTCACATTTTACAACCGTTAGATGTGAGCACTATGAAAGCAATGAAAGATCGCTGGGACCAACAGTTGATAAAGTGGCAACGGCTTAATATTGGAAGAAAGTTACCAAAAAAAAGAATTCACCAAAATTTTGGTTGA
- Protein Sequence
- MVRYYKRKTTDKYSQETLREAVKTVREQHMTALKASRVYNVPRATIISHVNGVRGVKSKSHGRPTVFSEEFEKKMASMLHIMERHGFGLTQREIRALVGQYVRRNNMDTPFTNGIPGEEWIRAFQRRNKLSLKKPQSVEIARKKAADPFVINEFYDLLQGIIQEQKLEGDQIWNLDETSFCQDPGKSKIVGLIGFQATRTTSSPGRDNTTVLFACNAYGEKVMPLIIFKGTYLWNSWLPDDDSGNQLAVASTSKGWMEASVFESYFSNVLIPQICKTGKPQLVIYDGHSTHLDLNVIMKAHDNNITLLKLPPHSSHILQPLDVSTMKAMKDRWDQQLIKWQRLNIGRKLPKKRIHQNFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700957;
- 90% Identity
- iTF_01209185;
- 80% Identity
- iTF_01209185;