Ppul001675.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982949.1:24813220-24817339[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-11 5.3e-08 34.1 0.0 1 37 20 56 20 58 0.96
Sequence Information
- Coding Sequence
- ATGAAGCCACGTAATAAGTTAGtgaagaaaaaagaaataagcCGAAGAAAAAAGTATGATCCGGAAAATTTGCAAAAGGCCTTGGCTGCAATTCAAGAAGGGATGAGTAAAAAATTGGCGGCCAAAACTTTCGAGGTTCCACGTGCAACCTTGCAATTCCGATGCAAGCATCCTGACAAAGTAGATCCAAGACCTGGTCCAGCAACTGTATTGTCTAAAGAAGAGGAAGAAAATCTAGTAAAATGGATAATTATAAGCAGCAAAAAAGGTTTCCCCAAAAGAAAGGAAGATATACAGTATAGTGTATCAAAGTTTTTGGAAGACACTAAAAGATCAAACCCTTTCAAAGGAAATGTGCCAGGGGAAAAGTGGATGAAACTTTTTCTTAAACGGCATCCTGAAATAAGTATCAGAACTTCAGAGGCAGTTACGGCTGCTAGTGCAAATGTTGCAGAGAAGGACATTAAAGGCTGGTTCTTCAAAATAGAAGAATATCTCAAACAAAACGGTCTTTTTGACGTCCTCTCTGATCCAAACAGGGTGTTTAATGGTGATGagacaagttttttattatgtcCCAAAACAGGGACAGTGTTGGCCGAAAAaggagaaaaaaatgtttacgaaATCGACAGAGGACTGGCAAAAAGTGCAATTACCGTTATGTTTACTTTTACAGCAAGTGGCGCTTTGACACCACCCATGATAATTTTCCCCTACAAAAGACTCCCAACTGATATTGCAGCAAAAGTTCCAGATAAGTGGGGAATAGGTCTTAGTGATAACGAATATAGTTCTCAATACATCGACATTGATCCTAACATACGTATTGAAGATTTAGATGTGATTATTGCTAACGATAATTTGAATATGAGTCTGTCACAGGGTTTGAACATCGCAGAGAAGTTCTTAGCGAATGTTGAAGCTAACGCTATTATTGATGCCAATATAATACCGGAGATACAGGAGAACACTCAAAAAGCTGACAAAAAAATTGTGGTAAGCAGTATAGTTTGCAATCCaacaaataaagaaattttaacAGTGCCAACGGAAAAAAATAGAACTGAAAATAAagtacaaaagaaaaatattgatcTGACCCCTGTGCAATTACAAGATTTGTTGATTGTTCCAAAAACCCCAATTCGCAAAGGAAATAGAGATACAGAAAGGACATCATTTGTACTGACATCCGCAGAATGGCAAagtaaagaaaatgaaaaattgCGTATAAAACAAGAAAAAGAAGACGCTATTAAGAAACGACGGGAAGAAAGAGAATTAAAAAAGACTTTACCAAAGACTAAACAAGTGAAAAAGGAACAAGTAAAGAAGGAAAAGAAGGAACCAGTAAAGCAGGAAAAAAAGGAACAAGGAAAGaaggaaaaaaattcaaagctTGTAACTGAAAACCTGCAGACACAGAAAATAGCAATGATAAAAAAGCAATTATTCTCACccgatttttataatattgcatCAACATCGAAGGAAACAAATAGTTTTGATAATTCGCTAAAAATAATAGATTTGAACCTAAACGTTAATGTAAAGAAGGACACAAAAAAGTACACCGAAGCAGAGGTAGAGAAAATGTTGACAGAATTTGAAGACTGA
- Protein Sequence
- MKPRNKLVKKKEISRRKKYDPENLQKALAAIQEGMSKKLAAKTFEVPRATLQFRCKHPDKVDPRPGPATVLSKEEEENLVKWIIISSKKGFPKRKEDIQYSVSKFLEDTKRSNPFKGNVPGEKWMKLFLKRHPEISIRTSEAVTAASANVAEKDIKGWFFKIEEYLKQNGLFDVLSDPNRVFNGDETSFLLCPKTGTVLAEKGEKNVYEIDRGLAKSAITVMFTFTASGALTPPMIIFPYKRLPTDIAAKVPDKWGIGLSDNEYSSQYIDIDPNIRIEDLDVIIANDNLNMSLSQGLNIAEKFLANVEANAIIDANIIPEIQENTQKADKKIVVSSIVCNPTNKEILTVPTEKNRTENKVQKKNIDLTPVQLQDLLIVPKTPIRKGNRDTERTSFVLTSAEWQSKENEKLRIKQEKEDAIKKRREERELKKTLPKTKQVKKEQVKKEKKEPVKQEKKEQGKKEKNSKLVTENLQTQKIAMIKKQLFSPDFYNIASTSKETNSFDNSLKIIDLNLNVNVKKDTKKYTEAEVEKMLTEFED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208051;
- 90% Identity
- -
- 80% Identity
- -