Ppul031728.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982965.1:1495452-1521377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-09 1.4e-06 29.5 0.0 4 39 176 212 173 216 0.89 2 4 1.3e-10 8e-08 33.5 0.3 2 39 228 265 227 268 0.92 3 4 3.8e-15 2.4e-12 48.0 0.2 2 45 283 327 282 327 0.96 4 4 5.6e-17 3.6e-14 53.8 0.0 1 41 334 375 334 378 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGAAACGGACCGTTCCAAGTCAAATGCGAACCACTGTCCGACGAAGAAGATAACAGTCCGCAGTTACAcgatatatttcttaataacaagGTTACTTTGGAGCACCACTCAGTAAAGGTGGAGACACCAGGGCAGAATGATGAGAACACGTCGTCTGATTTGTTGCAGCACTTGCAGTTGCAGACGCCTGGAGGTTTGGAAGAGCTGGCACCGCTCGCGCCGGCCGGCCCCGCTGCGACTCCGGTCTGCGTAAAGCCGGAGCCGGGGGAAACCGCCCTCAATCTGGAGACCCTTGAGTCTGCCCCGCATAGCACGGGCTGTTTTCTAATGAAAAGACACATAGCGCTGTTGAATTCACCGGATAACTTGGAATCATCTAGCTTCACGCCTCTGCACATCGTGAAGGATGAACCTTCGTCTGAAGGAGAGTTGCAGCACATGAGCAGTGATGAGACAAATGAGATGAGGGGTGACAACGAAGCAGTGCCACGTGGGAGCCCGAAGAGCTGGACTCAGCGTGATATGGATAATGCACTCGACGCGCTCAAAAATCATAATATGAGCCTCACCAAGGCATCGGCCACCTACGGCATACCATCAACGACGCTGTGGCAGCGCGCGCACCGACTCGGCATCGACACGCCGAAGAAGGAGGGCAGCGCCAAGTCTTGGTCGGAGGCTGATCTGCGAGGCGCCTTGCACGCGTTGAGGGCCGGAGCTATTTCTGCCAATAAGGCTAGCAAGGCTTATGGAATCCCGAGCAGCACCCTGTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGGGACCTCGCGCGGGCCCTCGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCACAGTACGGGATACCCACCGGGACTCTATACGGCCGGTGCAAACGTGAGGGTATAGAGCTGTCACGATCAAATCCTACGCCATGGTCCGAAGACGCAATGGGTGAAGCTTTAGAAGCAGTCAGAGTGGGTCAAATGTCAATAAATCAAGCAGcaattcattttaatttacCTTATTCATCTCTTTATGGGCGATTCAAGAGATGTAAATATATTGCCCAgGCCCAGCAAATGCCACAACAAGAAATCGCTAAAACGTCTGAAATAACCAATCAACATCCATCACAAGACCTTCCATACTACCACCAGATACCAGATCAGATGCACCCGGAACAAGATAACATATTAATGAATCAAAGCCAGTACACGCAGCAAGACTACGTTCAAGATACATCGACGCATCACAATATGATAATACAAGATCATTATGCATCTGGACCAGCGATGTATTATAACCAGAGCTTTAACAGCATCGTCACCAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPLSDEEDNSPQLHDIFLNNKVTLEHHSVKVETPGQNDENTSSDLLQHLQLQTPGGLEELAPLAPAGPAATPVCVKPEPGETALNLETLESAPHSTGCFLMKRHIALLNSPDNLESSSFTPLHIVKDEPSSEGELQHMSSDETNEMRGDNEAVPRGSPKSWTQRDMDNALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYIAQAQQMPQQEIAKTSEITNQHPSQDLPYYHQIPDQMHPEQDNILMNQSQYTQQDYVQDTSTHHNMIIQDHYASGPAMYYNQSFNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -