Pdol052991.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978467.1:8383997-8393259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00035 0.057 15.6 0.7 3 23 278 298 276 298 0.96 2 10 0.11 19 7.7 3.1 1 23 431 454 431 454 0.96 3 10 0.25 41 6.6 0.1 1 23 476 499 476 499 0.92 4 10 0.078 13 8.2 3.2 1 23 518 540 518 540 0.97 5 10 0.0046 0.76 12.1 2.4 2 23 545 566 544 566 0.96 6 10 0.00061 0.1 14.8 0.2 1 23 571 593 571 593 0.98 7 10 1 1.7e+02 4.7 2.0 2 23 599 621 598 621 0.93 8 10 4e-05 0.0066 18.6 1.5 1 23 627 650 627 650 0.97 9 10 2.1e-05 0.0035 19.5 1.7 2 23 656 677 655 677 0.97 10 10 6.3e-06 0.001 21.1 1.2 1 23 683 705 683 705 0.97
Sequence Information
- Coding Sequence
- ATGGGGATACATGAAGGGAAAAACACCAAACCACGATTAAAGAAAGATGTTGTTCCACATATTTTCCAATCCCAAGAAGTTAATAAGCTGGAGCCATCACCGGTAACAAAGAGCGTTTTACAGAGGAAAATAGACGCATTAGTCAAAAAAGAGCGTGTTGAATGGAGGTCAAAGCCTGACGTTTGTCGCTTATGCATCAACACCAGTGGCAGCTGTGACCTTACATCATCATACATGTCTGCTGAAGGGGAGAGGGAAGTCCTCCTACAGATGCTGGAAGACTGCTATGGCATTGTTTTATCAAACATATCGGAGTGGGGCCCGAGTAGATTCGTGTGCGACGGTTGTGCGGCACGCCTGCGATTCGCGTACCGTTTCAAACAGCAAGTGTTGCAAGCGGAAAAAAGTTTTAAGGAGTACCTTAGTAAGAATGGCGGTGAGTCACTGTCAGTAAGAAAAGAGGTAGatttgacagatgtcaaaaatgAAGACGACGATGATTCAATGACAATAATTAAAAGAGCAGCACCAAGGCTTCGAAAGCCAACGAAAATGAGAACttctaagaaaaaaaagttgaaaacgCGTAGTATTGATGGAAATAGACAAGACATCAGAATTCGTAAAAAGGTGATAAGTTCTAATAGAAAGAGAATTATAAAGGCGAAACCTGGTGCAACAGCGGATACAAATATTATAGATAAagatgttcaaaacACAGACGAATCAAAGCaagtaaaatacaataatatgctTTTTAAGATGACATGTGATACCATTCTCAAGAATACAACAGCGATCCCCTTGAAACGAAGCAAGagtaatataaattgtttctaCTGCGATGAAACTTTCAAAGATATCATAACACTCAGAGaacatacaaaaacacacaaaaacaatcaattatcaaaaaacATAGACAATATAGGTGTTCTAGATTTAGATATAACACAACTCAAATGTACCATTTGCAATATAGACCTTATGGATATAGAGAATACGATTCAACATTTCATTGAGATGCACAATAAGATTGTTAACAAAGAATGTATAGTTGTTTATGGTGGTGATGAAATTGATGAGACGAATGTGGAGGAttccaatgaaatggatgaagATGATGTTGTTAAAGAGGCTGTGAAACAAAATGATTCCcggaagaaaattaaaatgtcaTATGGCCCGAAGAAAATCAAACACATATCAAAGAGCAAACGCATTAAAATAACATGCGAAACGATTCTGAAATACACAACAGCTTGCCCCTTTAGGCATCACAAGAGTTGGTTTCAGTGCTTCTACTGCACTGAAGACTTCATGGACATGTGTGTACTCAAACAACACATGAAAGAAAATCATACACACAAAGACCTGTCCCGGATGAACAGATATCCGATCACTTTACTGATAGAGATCAGTGAATTCCAATGTAAAATGTGTAATATCGACCTTATAGACATTGACAATATGGTTCAACACTTGTCAGATACCCACAGTAAAGTTGTATACACAGAATGTATCGCTGATTACAAGATAGACAAAAGCCCATATGCGTGCCACAGATGCGATGCAAAATTTCACGTATTCAGATCTTTGACCGTACATCTTAATGAACATTATACTAATTGTATATGTGACGTATGTGGGAAGTCATACTTGAATTCCAAACGGTTGAATGTACACAAAAGGACACACGAAATGGGCACATTCCCTTGCAATGAATGCGGGAAAGTAATGAAGACCAAAGCGGCTAAAGCGAACCACATGCAATCACATTCTAAACGGGTCATAAAATGTCACATATGCTTTAAACCTATGAAGTATTACAACCAAAGGATCAAACATATGTCTGAAGAACACAACATAACGCATTACTTTATGTGCCCTTATTGCCCTAGGGAGTTCAAAATAAAGCATTCTTTAGCTACTCATATAAGACAGACGCACGGGGATAAAAGCAAAAAGTGTTTGGAATGTGGTATGGCGTTTATAACTAATCATGGTTTGAAGAAACATATGCTGAAGCATGCGGGGGTGAAGGCATTTGCATGTACTTTTTGTAGTAAGACGTTTGCTAGGAGCTATACGCTGAGAGAACACATAAGAGGGCATGAGACTGGTGGGAAATTTGTGGTGCAGTGA
- Protein Sequence
- MGIHEGKNTKPRLKKDVVPHIFQSQEVNKLEPSPVTKSVLQRKIDALVKKERVEWRSKPDVCRLCINTSGSCDLTSSYMSAEGEREVLLQMLEDCYGIVLSNISEWGPSRFVCDGCAARLRFAYRFKQQVLQAEKSFKEYLSKNGGESLSVRKEVDLTDVKNEDDDDSMTIIKRAAPRLRKPTKMRTSKKKKLKTRSIDGNRQDIRIRKKVISSNRKRIIKAKPGATADTNIIDKDVQNTDESKQVKYNNMLFKMTCDTILKNTTAIPLKRSKSNINCFYCDETFKDIITLREHTKTHKNNQLSKNIDNIGVLDLDITQLKCTICNIDLMDIENTIQHFIEMHNKIVNKECIVVYGGDEIDETNVEDSNEMDEDDVVKEAVKQNDSRKKIKMSYGPKKIKHISKSKRIKITCETILKYTTACPFRHHKSWFQCFYCTEDFMDMCVLKQHMKENHTHKDLSRMNRYPITLLIEISEFQCKMCNIDLIDIDNMVQHLSDTHSKVVYTECIADYKIDKSPYACHRCDAKFHVFRSLTVHLNEHYTNCICDVCGKSYLNSKRLNVHKRTHEMGTFPCNECGKVMKTKAAKANHMQSHSKRVIKCHICFKPMKYYNQRIKHMSEEHNITHYFMCPYCPREFKIKHSLATHIRQTHGDKSKKCLECGMAFITNHGLKKHMLKHAGVKAFACTFCSKTFARSYTLREHIRGHETGGKFVVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -