Pdol025246.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978451.1:6581905-6598797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.093 15 8.0 0.0 2 23 107 128 106 128 0.96 2 16 1.7 2.8e+02 4.0 1.8 3 23 373 394 371 394 0.94 3 16 0.31 52 6.3 0.1 3 21 404 422 402 423 0.94 4 16 0.067 11 8.4 0.3 2 23 433 454 432 454 0.95 5 16 0.1 17 7.8 1.4 1 21 502 522 502 525 0.89 6 16 0.023 3.7 9.9 0.3 1 23 597 620 597 620 0.92 7 16 0.35 58 6.2 0.6 1 23 625 648 625 648 0.96 8 16 0.00027 0.045 16.0 2.3 1 23 654 676 654 676 0.97 9 16 0.0015 0.25 13.6 0.5 1 23 683 705 683 705 0.97 10 16 9.8e-05 0.016 17.3 2.3 1 23 710 732 710 732 0.96 11 16 0.0015 0.25 13.6 2.8 1 23 738 760 738 760 0.98 12 16 1.7e-06 0.00029 22.8 1.6 1 23 766 788 766 788 0.98 13 16 4.6e-05 0.0077 18.4 2.7 2 23 795 816 795 816 0.98 14 16 0.0051 0.85 11.9 0.4 2 23 826 848 825 848 0.97 15 16 0.00013 0.021 17.0 0.1 1 23 853 875 853 875 0.98 16 16 0.0015 0.26 13.6 1.7 1 23 881 904 881 904 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCTGGTTCAGAAGACTCGGAAGACGAGCCACTGTCCATATTAGCATTGAAAAATAGAAATGATTCGGAACTTGAAATAACACCGGTGTTCAAAAAGGATGAAGCAAAAtctaaatgtataaaaatggACTGTGTATCGATAGCATTGCAACCCTTATATGAAACGTCGCCAGTGTTGGAAAAGCCAAAAGACGTTTGGTTGTATCTAACTGATCTTACTGCAACTGGCCCCTACAGCTGTTTACTCTGCCCGGAGTGGTTCATAAACAGACCCCGAATAGTAATTCATTACGCGGTCGATCATAAAAAAGATTACTGTGGAATTTGCAGATATTTTGTGCCCAACAGAGAAGCTTGGCAGGCACATCTTAAAATCCATTTGCCACTGAAATGCTCTCAATGTTCCGTGAGTTGCTTATCGGAGAAAGATTTAAGAGATCACTTTAGCAGTGTTCATAACCTAGTTCATTGTAGATTATGCCATTTGCGTCTACCAGATGACCATCAGTATCGTAATCATCTTCAAAAACACTTTGTCAAAAATGTTGCATGTATTAATGAAGACACACTGTGGGATTTTCAATGCAAGGATAATCAAAAATTTAAATGCCTTCTCTGCtccaaatttataaatattggcAAACAGTTTGGTGATCATTTTATGTCATATCATCACTTGACTCTTAGATGTTTTATGCATTTTATTTCTGGTTATGATTTCCCATTCAATATTAAGGGTGTAGATTTGACTCCAGGATTTATTGCAACACAACTGAATGCTTACAGTAGCTTCGGCTATGTTGACTTTCAAAAGACTATTAAAGTAAAAGAAGAATTAATCCAGGATGAAGTTAATGTAACTACCAACCAAGATACTGAGGTAAAGCCTGTGCCCAGACAAATTTTTGATGAGGGTTTAAGTTACAGTTATGACTCCAAGTTTTATAAAGGGGATGAAGACTTTGATGTCACACATATGGAGTTAATTATATTGCATCAATGCTATTACGATTATGTTAAAGAGGTCCTTCAAGAAATAAACTCAAATATAATGCCAACCAtctcaaatataaattatgctAATCAGACTGATGAACCTGATAATATAAACTGCTGTCTTTGTGAATATGGATGTGAAGGAAATAGAACACTTGAAGTGCATATGACTAAAGTGCATGGTGTTAAAAATCTGCCAATATATTGGTGTCGAGTATGTGCTGCTGTTTTTAATAGTGTGTCTCAGTTAGAAGTCCACATATGTCAAGAATTTGGCGAGTTTGTAGATCTTTGGATTTGCCAGTTTTGTGATAACGAATTTATTAACCGAGAAGAGACACGAAAGCATTTGACAGTTCACTGGAATGAGATTGAAGATGATAACTGTTTTAGTCCACATTTAGGATTTAAATGCAAGTTTTGTCCGACTCTGTTTTGGAATGAGATTGAACGAGAGGTGCACCATGTCAAAGATCATTACAAAATTCATACAAGTGATTTCTATAAATGCTTGTACTGTGATGAAATATTTGGCGATAAGGTATTTTTCACTTACCACTTCATAGACAAACACGGCAGAGAGAAGCCTCTGTACCTCCTGAAATGTTCTATTTGTTGTCTGGTGCTGCCCACTGTGAATGATATGAGGGTCCATTTTGAGGATGAGCATCCAAAAGCGAGGAAATTATACTGTTCGTTGGATCCATGCAAGTTCAAACCATTATGCCATAGGAAGTCTTTCTTACTTCATTTGAAGtcAGTGCACTTCCAAACTCGCATACGCAAGTACAAGTGTGAGTCGTGCGGCGAACAGTTCCCCACCGCCAAAGCTCGCACCACACACGTGACGCTGACGCACGGCCAGGGGAAGTACCAGTGCACACTTTGTACTGAGCTGCTGCGTACCAGTGATGAACGtAAGATTCATTACCTGATTCGGCACCCTGGTCGCTTCGAGTACCAATGCGTGGAATGCAACAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCATAAACAGGAGCACTCCACTTTTAAAGTGTCATACGCTTGCACCTTCTGCGGGAAAGTGTTTCTGAAACGGGACTCGTACCGCGAACATATACTAATTCACCAAGCGCCTCGACACGCATGTTCCTACTGCCCAATGCGTTTTGTGCAACGGTCCAATATGTTACGTCACGAGCGTCGGCACACTGGGGAGAGGCCTTATTCCTGCAAATACTGTCCTAGAACCTTCGCTGATAAAGGAGCCTGTACATCTCATTCCAGGACTCACACACGAACTACTAAATATGACTGCGTCTACTGCGGCCAAACTTTTGCCCAGAAGTCCAAGTTGAAATATCATATACGGAAACACACCGGCGAAGGTCTGGAAACGTGCACCGTCTGCGCCAAAACGTTCACGAGCGCGTGCTCGCTGCGGGAACATATGCGGATGCACGAGCGGCAGAAAATGGAGAAAACTGTCAAGTGTCCGCTTTGCCAAAACATGTATTCGGATGAGCGGGAGATGCTGCGCCACTTGCGTTCGTCCCACGCCAGCTCCAAGTACAAATGTCCGTTGTGTCGTAAAATTGTCACTTCCGCGAGCTCCTTGCGCGACCACGTCATCAGTCATAGCCAAGTCAAAACTTTTCAGTGCAATATTTGTCCGAAGTCGTACTTCGCGAAGAAGTCTATGATGAAACACTTAGAGAAACGGCACTTTTTGCAGAAAAACATAGTTAAAATCAAAGTCCACTACCGCCATCTCCAACCCCACGAGTGCAACCTTGACCTCGATCCAGAACTCATGGAGAAGATCTTCGGGAACCCCAACAAGAAACCCAACCTCTCCGAATTCAAGGTTAAAAGGCCAGGATTCAAAATGGATAATGTACTTAGCGAAGAAAAAAAGAAACCAAAAGAAAGTAAGGATTCGGTGAATGAGAACTTTATTAAAAGTATTGAGATAAAAGTTGAGCCGCATAGTGATAATGAtggtgatggtgatgatgacgatgatgataatGGTGGTAGAGGTGAAGTTCTCCCACCTGATTTTGTGAGTGTCAAAGTGGAATGTGTGCCAAAAGAAGAAGTGCctgatacagaagtggattaa
- Protein Sequence
- MASGSEDSEDEPLSILALKNRNDSELEITPVFKKDEAKSKCIKMDCVSIALQPLYETSPVLEKPKDVWLYLTDLTATGPYSCLLCPEWFINRPRIVIHYAVDHKKDYCGICRYFVPNREAWQAHLKIHLPLKCSQCSVSCLSEKDLRDHFSSVHNLVHCRLCHLRLPDDHQYRNHLQKHFVKNVACINEDTLWDFQCKDNQKFKCLLCSKFINIGKQFGDHFMSYHHLTLRCFMHFISGYDFPFNIKGVDLTPGFIATQLNAYSSFGYVDFQKTIKVKEELIQDEVNVTTNQDTEVKPVPRQIFDEGLSYSYDSKFYKGDEDFDVTHMELIILHQCYYDYVKEVLQEINSNIMPTISNINYANQTDEPDNINCCLCEYGCEGNRTLEVHMTKVHGVKNLPIYWCRVCAAVFNSVSQLEVHICQEFGEFVDLWICQFCDNEFINREETRKHLTVHWNEIEDDNCFSPHLGFKCKFCPTLFWNEIEREVHHVKDHYKIHTSDFYKCLYCDEIFGDKVFFTYHFIDKHGREKPLYLLKCSICCLVLPTVNDMRVHFEDEHPKARKLYCSLDPCKFKPLCHRKSFLLHLKSVHFQTRIRKYKCESCGEQFPTAKARTTHVTLTHGQGKYQCTLCTELLRTSDERKIHYLIRHPGRFEYQCVECNKSFQYKSSLYMHKQEHSTFKVSYACTFCGKVFLKRDSYREHILIHQAPRHACSYCPMRFVQRSNMLRHERRHTGERPYSCKYCPRTFADKGACTSHSRTHTRTTKYDCVYCGQTFAQKSKLKYHIRKHTGEGLETCTVCAKTFTSACSLREHMRMHERQKMEKTVKCPLCQNMYSDEREMLRHLRSSHASSKYKCPLCRKIVTSASSLRDHVISHSQVKTFQCNICPKSYFAKKSMMKHLEKRHFLQKNIVKIKVHYRHLQPHECNLDLDPELMEKIFGNPNKKPNLSEFKVKRPGFKMDNVLSEEKKKPKESKDSVNENFIKSIEIKVEPHSDNDGDGDDDDDDNGGRGEVLPPDFVSVKVECVPKEEVPDTEVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -