Pdol052872.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978467.1:7332718-7338171[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.7 1.1e+03 2.1 2.9 1 23 44 66 44 66 0.90 2 16 0.14 23 7.4 0.2 2 23 94 116 93 116 0.95 3 16 2.3e-05 0.0038 19.3 3.4 1 23 139 161 139 161 0.97 4 16 0.032 5.2 9.4 0.9 2 23 166 187 165 187 0.96 5 16 1.3e-05 0.0021 20.1 0.8 1 23 192 215 192 215 0.95 6 16 2.5 4.1e+02 3.5 4.8 2 23 225 247 224 247 0.88 7 16 0.82 1.4e+02 5.0 6.3 1 23 292 314 292 314 0.97 8 16 0.031 5.1 9.5 0.3 2 23 342 364 341 364 0.95 9 16 0.00018 0.03 16.5 3.1 1 23 387 409 387 409 0.95 10 16 0.093 15 8.0 1.2 3 23 415 435 413 435 0.95 11 16 0.00024 0.04 16.1 4.3 1 23 440 463 440 463 0.96 12 16 2 3.3e+02 3.8 4.8 2 23 473 495 472 495 0.88 13 16 0.00052 0.085 15.1 2.3 1 23 501 523 501 524 0.96 14 16 0.029 4.8 9.6 4.5 2 23 529 550 528 550 0.97 15 16 0.00016 0.026 16.7 4.8 1 23 556 578 556 578 0.97 16 16 9.3e-05 0.015 17.4 0.6 1 23 587 610 587 610 0.96
Sequence Information
- Coding Sequence
- ATGAAGACTGAAGAAGGGAATCAGCGAGCGAACACTAGCATCTGGGAGCTGACGGTCTCTGAACGCATGAACGCTTCTACGATCATCCGGCTCACCACCGCCAGGCCCTTCGTCTACTGTCGAAACTTCTTCAAATGCTTTTACTGCCATGAAGACTACTTGGACATCAAGAAACTTCTCGAACACACTACGTCACATCAAATTCCCGACCAGGCCAAAATTTTGAATGAACTGCTCAAGAAAGGGAAACGAACGCTCAAAGTTGATATATCAGAACTGAAATGTCGAATGTGCCAGCAAGAATTTGAAGACCTCGACGTGATTAGGAAACATTTAGTGACAGAACATAGCGTCACATTCACAGAGTCGAAAAACGGGGTTGTTGTTTATAATATATCCACGAAGAGCGAGTTGTTCTTCTGTCATATCTGTAAAAAGAAgttcccgacatttatccttctTAACAGGCATATGAATGTGCATTTCAATACCTCAGTCTGTGAGATCTGCGGCGCTGGCTTCATGTCGCACCATAGACTTATACAGCACAAGGAAATCCACCAACCAGGAGGATATTCTTGCAACCGCTGCAGTAAAGTCTACACAACCAAAGGCAATTTAAAATATCACATATTAGAAGCTCATGAAGGGTCCAAAAAGATACGAACGCTCCGATGTTCTCACTGCCCTGAGAGATTTACCGAGCACTTCAGGAAATTAAAGCATTTGAAAGATTCTCACGGAACGAAGACTGAAGACGGGAAGCAGCGAGAGATCACCAGCCTCTGGGAGCTGACATCCTCCGAACGCATTAACGCCTCAAACATTGTCAGGCTCACCACCGTCAGGCCATTCGTCTACTGCCGATACTTCTTCAAATGCTTCTTCTGCCATGAACACTACTCGGACATCAAAAAACTCCTCGAACACACTACATCGCATCAAATTCCCGACCAGGCCCAAATTATGAAAGAACTGCTTAAGAAAGGGAGACGAACGCTCAAAGTTGATATATCAGAACTAAAATGTCGAATGTGCCAGCAAGATTTTGAAGACCTAGACTTAATCAGGAAACATTTGGTGACAGAACATAGCGTCACATTCACGGAGTCAAAAAACGGGGTCGTAGCTTATAATATATCCACGAAGAACCAGCTGTTCTTATGTCACATCTGTAGCAAGAAGTTCCAGACATTTATCCTTTTGAACAGGCATATGAATGTGCACTTTAGTAACTCAATCTGCGAGGTCTGCGGCGCTGGCTTCATGTCGCACCATAGACTAATGCAGCACAAGGAAATCCACCAACCAGGAGGACACCCTTGCAACCGCTGCAATAAAGTCTACACAACCAGCTGTAATCTGAAATATCACATAGAAAAAGCTCATGAAGGGTCCAGAAGGATGAGAATGCTTCGATGTCCACATTGCTCTGAAAGATTTACCGAGCACTTCAGGAAATTAAAGCATTTGAAAGATTCTCATGGTATAACTTTTACGTTTGAATGTGATATGTGTAAATCAGTGTTTCCGACCAGAAGAGCTTTAACTACCCATACGAACAGGCATCATTCACAGAAGACCCAATGTGAACTATGTAAGAAATGCTTCAGCTGCATCACGGCTCTAAGAGTCCACATGCTCAGTCATTCTGGTGAAAAGAATCATGTTTGTGGAACGTGTCAAAAATCATATAGATATAAGAAGAGCTTGAATTATCACATGAAATCTCATGCTAACGGGAATCAGTTAATAAAGTTTACATGTCCAGGGTGCAGCAACGTGTTTTCGAGTAGGAACGACTTTACTAAGCATGTTAAGGAATGGCATCCTAGCAGCTATTTTGATTATATGTATTCAGTTGAAGCTAACTAA
- Protein Sequence
- MKTEEGNQRANTSIWELTVSERMNASTIIRLTTARPFVYCRNFFKCFYCHEDYLDIKKLLEHTTSHQIPDQAKILNELLKKGKRTLKVDISELKCRMCQQEFEDLDVIRKHLVTEHSVTFTESKNGVVVYNISTKSELFFCHICKKKFPTFILLNRHMNVHFNTSVCEICGAGFMSHHRLIQHKEIHQPGGYSCNRCSKVYTTKGNLKYHILEAHEGSKKIRTLRCSHCPERFTEHFRKLKHLKDSHGTKTEDGKQREITSLWELTSSERINASNIVRLTTVRPFVYCRYFFKCFFCHEHYSDIKKLLEHTTSHQIPDQAQIMKELLKKGRRTLKVDISELKCRMCQQDFEDLDLIRKHLVTEHSVTFTESKNGVVAYNISTKNQLFLCHICSKKFQTFILLNRHMNVHFSNSICEVCGAGFMSHHRLMQHKEIHQPGGHPCNRCNKVYTTSCNLKYHIEKAHEGSRRMRMLRCPHCSERFTEHFRKLKHLKDSHGITFTFECDMCKSVFPTRRALTTHTNRHHSQKTQCELCKKCFSCITALRVHMLSHSGEKNHVCGTCQKSYRYKKSLNYHMKSHANGNQLIKFTCPGCSNVFSSRNDFTKHVKEWHPSSYFDYMYSVEAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -