Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978467.1:7347239-7366048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00011 0.018 17.2 0.8 2 23 36 57 35 57 0.96

2 14 3e-05 0.005 19.0 2.2 3 23 62 82 61 82 0.95

3 14 4.5 7.4e+02 2.7 3.5 1 23 87 110 87 110 0.95

4 14 0.28 46 6.5 0.0 2 23 212 234 211 234 0.90

5 14 1.9 3.2e+02 3.8 0.0 2 23 335 357 334 357 0.93

6 14 0.005 0.83 12.0 0.1 2 23 464 486 463 486 0.96

7 14 0.0001 0.017 17.3 3.1 2 23 510 531 509 531 0.95

8 14 0.00014 0.023 16.9 0.3 3 23 536 556 534 556 0.95

9 14 0.17 29 7.1 3.7 1 23 561 584 561 584 0.96

10 14 0.012 2.1 10.7 3.5 2 23 595 617 594 617 0.95

11 14 0.024 3.9 9.8 2.6 1 23 623 646 623 646 0.96

12 14 7.8e-06 0.0013 20.8 2.8 2 23 651 672 650 672 0.97

13 14 0.00025 0.042 16.0 1.0 1 23 678 701 678 701 0.97

14 14 0.00023 0.038 16.2 0.3 1 23 705 728 705 728 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00011	0.018	17.2	0.8	2	23	36	57	35	57	0.96
2	14	3e-05	0.005	19.0	2.2	3	23	62	82	61	82	0.95
3	14	4.5	7.4e+02	2.7	3.5	1	23	87	110	87	110	0.95
4	14	0.28	46	6.5	0.0	2	23	212	234	211	234	0.90
5	14	1.9	3.2e+02	3.8	0.0	2	23	335	357	334	357	0.93
6	14	0.005	0.83	12.0	0.1	2	23	464	486	463	486	0.96
7	14	0.0001	0.017	17.3	3.1	2	23	510	531	509	531	0.95
8	14	0.00014	0.023	16.9	0.3	3	23	536	556	534	556	0.95
9	14	0.17	29	7.1	3.7	1	23	561	584	561	584	0.96
10	14	0.012	2.1	10.7	3.5	2	23	595	617	594	617	0.95
11	14	0.024	3.9	9.8	2.6	1	23	623	646	623	646	0.96
12	14	7.8e-06	0.0013	20.8	2.8	2	23	651	672	650	672	0.97
13	14	0.00025	0.042	16.0	1.0	1	23	678	701	678	701	0.97
14	14	0.00023	0.038	16.2	0.3	1	23	705	728	705	728	0.95

Sequence Information

Coding Sequence: ATGGATGATATCAGAGAGCATTTGGTAACAGCACATGATACTGTATTTGGCACAGGCCGGAATGGTCTGTTGCCTTACATTCTCAGCTCTAATAACGGTCTTATGACCTGCTATAAATGTGACAAGGCATTCGTGAGTTTCCGGGAATTGAACAATCATATGAGTGAGCACAGCGGTGAAATCTGTGAGACATGTGGAAAGTGTTTCAGAACTCCCACGCAACTCAGAATCCATAAAGAAAATCACCAAAGTAATAACTACAAATGCGAGTCGTGTGATTTTGAATGTAATTCAATGGTTAGGTTTACTTACCACATGGGACGGTATCATGACGATACAAATGTGAAAGGTCCTCAGAAAAGTCAACATACTCCTGCTAAAGAAGTAAAAAGGAGTTCTCGGACAATAATCAAACCAGAGAAAGAAAACGCTGCAACTTTCATCGAATTCACGACGGCAACACCGTTCATATACGATAAAAATGCagtttttaaatgtttctaTTGTCTCGAAAAATACTTGGACGTTATCGCCGTGTTACAACACACGCTGATCCATATTCCGAACAGACCCTTCTTGATAGAAACTATTATGAAGACGAAAAATCTGATCAAAGTTGACATATCAGAGTTGAAGTGCAGAATCTGTGATACAAAGTATGCAGACATTGATGGTATCAAAGAACATTTGATAGCAGCACACGAGAAGGTATTGGGATCAGGTCCTCAGGAAAGCAAAAACAGTTCCAGTATAGACGAAGAAAGAAGATATAGCACATTGAACAGTAATGAAAAAGCGAACGCGATTAACCTCCTCGAATTCACAACTGCGAAACCGTTTATGGCGTGCAGTGGGTATTTTAGATGTTTCTACTGTCCTGAAACAGCCTTACACGTGAATGAAATCTTAGATCACACGGAGATACATACTCCAAACAGACCTTTACTGCAAAACATTGTTAGAAAAGCCTTAGAAATTATCAAAGTTGATATTACAGAGTTAAACTGCAGAATCTGTGGTATAGAATATTTGGATATTGATGACATCAAAGAACATTTAAAAACTGTCCATAACACGGTATTTGGATTTGGTCGGACAGGTCCTCAAAAAAAGGAGCAGGGCTCCGGTAAAGAAGTCTCGGGACCACAAAAACGTAAGCCCAGAATGATGAGACCAGAACGCGACAACGCAGCAACCTTGCTCGAATTCACGACAGTCAAACCCTTCATATTTAGCAAAGGAATCTTCACATGCTTCTATTGCTGTGAAACATACACAGATGTGAATTCAGTCTTACAACACACAGGGGTTCATACGCCGAACAGATTTGTCCTCAAGGAATGTGTCAGAAAAATTAGAGAAACGATCAAAGTTGACATATCAGAGTTGAAATGCAGTATCTGTGATCTGGTGTATTCGGATATCGATGATATTAGAGAGCATTTGACAACGACACATGAGAAAATATTCGCAGCAGGTGGAAACGGCCTGTTACCTTACATTCTTAACACAACCAACAATCTTATCACTTGCCACAAATGCGAAAAAGTATTCACCTCATTCTACAAATTAAATTCACACATGAGTGATCACAGCGGCATGATATGTGAAACATGCGGCAGAGGTTTCAGTACACAAAATAAACTTAGAATACACAGTATGATCCACCAAAACTCAACATATAAATGCGACAAATGTGATGTTGTGTGCACCTCAGTGAGAAGATTCAAATACCATCTGATAAGGTATCACGAAACGGATATTAAGAAAGCTATGCCATCTAAATGCCCTCATTGCTCCGAACGATTTTCAGACCACTACAAAAAGATTGCACACTTGAAACAAGCCCACGGTATATCCTTGACGTTCCAATGCGCTACTTGCAATACCTTTTTCCCGTCGAGGAGAAGGTTAACAGAACACACAACTAAATACCATATACAGAATATAAAGTGCAAGATTTGTGAAAAGTGTTTTGTTAGTTCTACTTTGTTGAGATATCATATGAGAGAGCACATCGGTGAACGTAACTTTGTGTGCGCGATTTGCCAAAAGGCTTATATGCATGAAACAAAGTTGAGACGGCATATCAACGTAAACCATGGTTTCCGATTTGTGTGTTTCAAATGTGGAGAAGGGTTTCCAGAAAAGGATGATCTTATCAAACATAAGAAGGAACGTCACAGTGAGAAGAATAAAGTTGCATAA
Protein Sequence: MDDIREHLVTAHDTVFGTGRNGLLPYILSSNNGLMTCYKCDKAFVSFRELNNHMSEHSGEICETCGKCFRTPTQLRIHKENHQSNNYKCESCDFECNSMVRFTYHMGRYHDDTNVKGPQKSQHTPAKEVKRSSRTIIKPEKENAATFIEFTTATPFIYDKNAVFKCFYCLEKYLDVIAVLQHTLIHIPNRPFLIETIMKTKNLIKVDISELKCRICDTKYADIDGIKEHLIAAHEKVLGSGPQESKNSSSIDEERRYSTLNSNEKANAINLLEFTTAKPFMACSGYFRCFYCPETALHVNEILDHTEIHTPNRPLLQNIVRKALEIIKVDITELNCRICGIEYLDIDDIKEHLKTVHNTVFGFGRTGPQKKEQGSGKEVSGPQKRKPRMMRPERDNAATLLEFTTVKPFIFSKGIFTCFYCCETYTDVNSVLQHTGVHTPNRFVLKECVRKIRETIKVDISELKCSICDLVYSDIDDIREHLTTTHEKIFAAGGNGLLPYILNTTNNLITCHKCEKVFTSFYKLNSHMSDHSGMICETCGRGFSTQNKLRIHSMIHQNSTYKCDKCDVVCTSVRRFKYHLIRYHETDIKKAMPSKCPHCSERFSDHYKKIAHLKQAHGISLTFQCATCNTFFPSRRRLTEHTTKYHIQNIKCKICEKCFVSSTLLRYHMREHIGERNFVCAICQKAYMHETKLRRHINVNHGFRFVCFKCGEGFPEKDDLIKHKKERHSEKNKVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -