Pdol051835.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978466.1:13096411-13110350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.1e-06 0.0012 20.9 0.1 2 23 266 287 265 287 0.97 2 11 0.00023 0.038 16.2 3.1 1 23 386 409 386 409 0.96 3 11 0.00085 0.14 14.4 2.9 1 23 413 435 413 435 0.98 4 11 0.42 70 5.9 3.5 2 23 457 479 456 479 0.92 5 11 3.7e-05 0.0062 18.7 3.2 1 23 483 506 483 506 0.98 6 11 0.01 1.7 11.0 0.6 2 23 529 551 528 551 0.90 7 11 1.8e-07 3e-05 25.9 1.6 1 23 561 583 561 584 0.96 8 11 0.0089 1.5 11.2 1.2 2 23 600 621 599 621 0.96 9 11 0.0021 0.35 13.1 0.4 1 23 627 649 627 649 0.96 10 11 0.48 79 5.7 4.4 1 22 655 676 655 679 0.90 11 11 0.00016 0.026 16.7 0.1 3 23 732 752 730 752 0.97
Sequence Information
- Coding Sequence
- ATGTCTGCAGAAGATTCTTCACAGGCGCCACTGGATGTAACAGTGAAAGAAGAATTTAATCCCTCTACAGAAGAAGATACCTTCCAAGTGAAAATTGAGACAGACATTGTAGAAACTACTGAAAGTCAATATGAAGAGACAGAGCTACAGATAAAAGACGAACTGATTCTCAGCATAGAACAGTATGACTCTCAGAGTAGTACGGAAGTTAAAGATTTCAAAGATGAAGAAACAGAAACTATACTACCAACAAGCACAGACAACATTGACCTCAAACAAGAGACGAGTCAAAATGAAATTTTGGAGAGTAGTGCGCCGCATGATTTCTCCGGCTATGAGGACAGCATGGACAGCAGCGATGCAGCCGCACTGAGCCACGTCGAGGCTTGCCTGAGCGACGATGTCACCATCAAGCCTGAACGTGGTGACTGTGATGAAATCCAGAAAGACTTCCCAAGAGTCATCAAAGAAGAATCCGATCTCACGGTAACAGAGACGCATCTTATTTCCAACAAACTTATCAACACTACATCAACAATCACCAACACTCTTGACGGTATCATTGAGTCTCAAACAACAAAAACTTTAATAATGGAAATTCATCCTGTCACCCAACAAAACCAGAATATGAAAATGAGTAATCCCGAAGAAATATTACCAACTACAGAAACGTACATGGACTATGAAGTACCCTTCCAACTCAATTCCATCACTGGCAATATCTTATCTCTAGAACAAGAAGCTTACGGATTGTTGAAAACCAAAAAGAAAGTCGCCAACTTAAATAAAACTGTCATGTGTCCAAAATGCCCGAAAAGTTTAGTGAACGCTAGCGCGTTAAAAAGGCACCTCAAAGTTCACGATACTATAGAAAATAGAGCGAAAGGAGTCCTCAAAGGCTTAAAAACACGAATCGAGAACAGAAAGAAACTTCTAAAAAAAGTTGATGAGACTGAATATAAAGTGTCagtaaaaataaagaaagaagACAAAAAGGCTATtcctaaaaaaattgaaaaaactgAAGATAAAAAAATCACCATAAAACATGCGGAAAAGGATGGTTACAAATGTACATGTGGACAAGTTTTTCAAAGGCGTAGTCGAATGGAGACCTGTCTGCGGTCGCACACAGAATTCGAAGGTTCAAGTATTTACGCTTGTGCAACTTGCGACCAAAAATTCAAGTCAAAAGAACTCCTAACACACCACCGTAACAGACAGCATCGTAAAAAGTTTCCATGTAAATTTTGCCCTACAGATTACCACACGCAAAAAGAACTGTTCAAACATTTACGCGTGCATCAGAAAGTCCAACTGACGGATTACAAAGTCATATCCGAAGTTGCAAAAGGAAAGCAAGAGCTACACTGTTTACTTTGCACAAAAACGTGTTCTAAACTCCCTGATTTTAAATCTCACATATTGGAAAGTCACGAAGAGCCTTACAACTGTCCACATTGCAATCAGACATTCACAAAGATAATGGATTTCACGAATCATATGAGGAAGATACATCCCGATGTCGGCAGTGAGTCGGTCCTGGACGTTCTTGAAGCCTTTGCAAAACTGGTTAAAGCTTGGAAGTGTGAGAGTTGCGGCAAACAGTTCCATAAAGCGGACAAGTTAGCTTTGCACCAAGTGGAAGAACATACGCCTGATATGAAAAATGAACAGCATTTTCAGTGTGGAGATTGCCAAAGAGTGTTCGTCAGTAAGAGTGGTTTAAACTCTCATATGAGGATGCATCACAGAACAGAAGCTACTGAAGAGCCTGAACCGGAGGAAGTGGGAGTCATGTGTTTGGAGTGTCGGAAAGTATGCCAGGATATGACCGCGCTAACCTCCCACATGCGTCTGCATTCCATGGATAGGAAATATCCTTGCAAATACTGCGACTTTCGGTTTGCGACACCTCAGAAGCGAAAAGCGCACGCGGAAATACACACAGGCGATATGAAATACGTATGTTTCATATGCGAATACCAGTGCAGTTCAGAGAATAGGTTAAAACACCACAGGATGTCGATAAAACATCTCAACATGAAAGAGTACCTTCTGACTGGGAAGCCGTTGATCGAGGAGGAGCAATCAACATCCAAAaaggataaaataaaagatacgttaagaaagaaagagtggggtgttaaaaagaaaaagaaagaacGGAAGGAGAAAGAGTGTGATATAGATTGTGATATATGCGGGGAAAAGTTTTCTAGTGAAGAGGAAATGCAAGAACATAAACAGACTCATCCGTTTATTGAGTTTCCGAACGATGATAAGCCTAGCAGGATATTCTTTAAATGA
- Protein Sequence
- MSAEDSSQAPLDVTVKEEFNPSTEEDTFQVKIETDIVETTESQYEETELQIKDELILSIEQYDSQSSTEVKDFKDEETETILPTSTDNIDLKQETSQNEILESSAPHDFSGYEDSMDSSDAAALSHVEACLSDDVTIKPERGDCDEIQKDFPRVIKEESDLTVTETHLISNKLINTTSTITNTLDGIIESQTTKTLIMEIHPVTQQNQNMKMSNPEEILPTTETYMDYEVPFQLNSITGNILSLEQEAYGLLKTKKKVANLNKTVMCPKCPKSLVNASALKRHLKVHDTIENRAKGVLKGLKTRIENRKKLLKKVDETEYKVSVKIKKEDKKAIPKKIEKTEDKKITIKHAEKDGYKCTCGQVFQRRSRMETCLRSHTEFEGSSIYACATCDQKFKSKELLTHHRNRQHRKKFPCKFCPTDYHTQKELFKHLRVHQKVQLTDYKVISEVAKGKQELHCLLCTKTCSKLPDFKSHILESHEEPYNCPHCNQTFTKIMDFTNHMRKIHPDVGSESVLDVLEAFAKLVKAWKCESCGKQFHKADKLALHQVEEHTPDMKNEQHFQCGDCQRVFVSKSGLNSHMRMHHRTEATEEPEPEEVGVMCLECRKVCQDMTALTSHMRLHSMDRKYPCKYCDFRFATPQKRKAHAEIHTGDMKYVCFICEYQCSSENRLKHHRMSIKHLNMKEYLLTGKPLIEEEQSTSKKDKIKDTLRKKEWGVKKKKKERKEKECDIDCDICGEKFSSEEEMQEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -