Basic Information

Insect: Plagodis dolabraria
Gene Symbol: PZF1
Assembly: GCA_963854805.1
Location: OY978462.1:5138336-5142666[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.04 6.6 9.1 0.1 5 23 357 375 355 375 0.96

2 11 0.014 2.4 10.5 0.3 3 23 383 403 381 403 0.94

3 11 2.1e-07 3.5e-05 25.7 1.1 2 23 438 459 438 459 0.98

4 11 0.0032 0.54 12.6 4.3 1 23 465 487 465 487 0.98

5 11 0.0061 1 11.7 0.4 2 20 492 510 491 511 0.92

6 11 8.9e-05 0.015 17.5 0.1 1 23 542 565 542 565 0.96

7 11 0.00036 0.06 15.6 0.2 3 23 574 594 573 594 0.99

8 11 6.2e-05 0.01 18.0 0.5 1 23 603 625 603 625 0.98

9 11 4.5e-05 0.0075 18.4 4.6 1 23 631 653 631 653 0.98

10 11 0.0032 0.52 12.6 0.3 3 23 661 681 659 681 0.98

11 11 4.6e-06 0.00076 21.5 0.5 1 23 687 710 687 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.04	6.6	9.1	0.1	5	23	357	375	355	375	0.96
2	11	0.014	2.4	10.5	0.3	3	23	383	403	381	403	0.94
3	11	2.1e-07	3.5e-05	25.7	1.1	2	23	438	459	438	459	0.98
4	11	0.0032	0.54	12.6	4.3	1	23	465	487	465	487	0.98
5	11	0.0061	1	11.7	0.4	2	20	492	510	491	511	0.92
6	11	8.9e-05	0.015	17.5	0.1	1	23	542	565	542	565	0.96
7	11	0.00036	0.06	15.6	0.2	3	23	574	594	573	594	0.99
8	11	6.2e-05	0.01	18.0	0.5	1	23	603	625	603	625	0.98
9	11	4.5e-05	0.0075	18.4	4.6	1	23	631	653	631	653	0.98
10	11	0.0032	0.52	12.6	0.3	3	23	661	681	659	681	0.98
11	11	4.6e-06	0.00076	21.5	0.5	1	23	687	710	687	710	0.96

Sequence Information

Coding Sequence: ATGTATCTCATTAATATGGCGATTCGACAACCAATATTTATCAAGCCTCATTGTGTCATGCCATTAACAGTCAAAATTGATGATGGTTTACCTCAGAAGCTGTGTGGTGACTGCTACTCAACTTTGACTTCAGCATATCAGTTCCGTAAACAGTGCATCAAGATGGATACTGAGTTAAAACTACAGCTATGTAATCTACTAAGCCAATGTAATGAGAGTAATATTATAAGTTTGGAAAAAGCAGCAGAAAATGCTGAAGATGAAGATCAAGATGTTGAATTTGCCAATGATCCCATGAAGCAATTGGAAGCTGTCATTAAAAAAGAACCAATGGACAGTGATGATGATTACTATTACGTTCTGGTCATTGACAATCCgaaagataaagaaaattctGACGAACAACCATCTAGTAAAAGTAAATCATCTTTGAAAATCAAGTCCGAAATGAAGAATATAAAGTTCAaagatgaaaaaaatacaatgaaaaGCAATGGCTTAGATCAACGGCTGAGTGATATCTATGAGGATACTGAAGATATTCTCCCTGATACTATTCAAAATCCAGAAATGGAGGATCAGAAAAATCACCATGAATTTGGTAATACCATAGAATCATTCCTAATGTCAAACAATTTTCCTGTTAATGTCCCTGCTACAATTCTAGATAATGAAGACATAAGTTACAATGACAATGAGgttatgaatatagatgaaaccCAAGATAGCACATCAcaagaaataatttttcagaCTGATGAAAATTCACAAGACACTAACATACAAGAAATCACCAATCAAAACttggttaaaattttaacaagcaCTCGTAAAGATGGCACTATACTTCTGAAGAGTGATGCCATGGTACAGTACTTGACTGAAAACGGGCAATTAGTCATGAATGATGAAGATGGAGATCAATCATCACAAGAAGTAATTCTATGTGAAGGTGATGAATCGCAGTTTCAGATTGTGAAGTATGATGGTTCAGAGCTAGTTATAGAATATGCAGATGATGGTGGAATAGCTACTGTACTACAGCAACCAGGTGATATGTATGAGTGCGAATGCGGAGAACAATTCCAAGACCTAGAGGATTACGAAAAGCACCAACTTAGACATAATCCAGCTGGAGTCCACTTATGTAAATTATGTGGAAAAGGCTTTGAATCTGCTGAAATATTGACGGGCCATATGCTTTTGCACAATGTTTCTGGTGTGCTGCTTCAATGTCCCTTTTGTGAGCAGCTTATGAAAAGAAGTGTATTGACACAACATATCAAGTACAACCACAACAACATCAAACCTCAGTGCAACATTTGTAAGAAAACATTTGCAAACCCAAATAACCTCAAACGTCACATGACGATACACAGTGGAATCAAAGACTTTGAATGTGATATCTGCTTCAAACGTTTCCACCAGAAAATAACTATGCAGACTCACAGACTCACTCATATGAATCCACTGAATTGCTCTCAGTGTGACACTGTATTTAAAGACAAGCAATCATTAGATCAGCACAAAGAGGACAATGTCTGCCCAAAAACTAAAGTGAAGGAGGAATTAATGAAAACTGTCAAGCAAGAAGTCACAACTAATCTTGGGAAGTTGCTTGGTTACGCTTGTTCACTTTGTAACACAATGTTCTCAGTAGAATCAGCATTGGAGCGCCATATAGAATCCACTCACATTGTCGACCCAGCGGAGTTGTTATGCTCTGAGTGTGGCCGAGTATTAGGCTCCAAGAAAGACTTGCAAATGCACATTCTTACACATGATAGACGTAAAAGTATTAAAAGATTTGAATGTTCAACTTGTGGCAAACCATGTTCAAGTCAAGCTATGTTGGTTATGCACGAGAGAGTACATACTAATGAAAGACCATTTTCCTGTCAACTTTGTCcgctcaaatttaaaacaaaaactcatCTACGGACTCATCAGCTAACACACACAAGGGAGAAAAAGTTTGGGTGTTCAGTATGTATGAAATTCTTTGCCCTTAAAGGCAACTTGGTTGTTCATTTACGTACGCACACAGGAGAAAGGCCATATGTGTGTCCAATGTGTGGTGAAGCGTTTATAGattcaaaataccttaaaaaacaCAAGTTGAAGAAGCATGCTCTGGAATCAATTAATCCCGGTTCATGGTTCAACCTTAAAGTCAAAACTGAGGACACTGAAAGTGAAAATTAG
Protein Sequence: MYLINMAIRQPIFIKPHCVMPLTVKIDDGLPQKLCGDCYSTLTSAYQFRKQCIKMDTELKLQLCNLLSQCNESNIISLEKAAENAEDEDQDVEFANDPMKQLEAVIKKEPMDSDDDYYYVLVIDNPKDKENSDEQPSSKSKSSLKIKSEMKNIKFKDEKNTMKSNGLDQRLSDIYEDTEDILPDTIQNPEMEDQKNHHEFGNTIESFLMSNNFPVNVPATILDNEDISYNDNEVMNIDETQDSTSQEIIFQTDENSQDTNIQEITNQNLVKILTSTRKDGTILLKSDAMVQYLTENGQLVMNDEDGDQSSQEVILCEGDESQFQIVKYDGSELVIEYADDGGIATVLQQPGDMYECECGEQFQDLEDYEKHQLRHNPAGVHLCKLCGKGFESAEILTGHMLLHNVSGVLLQCPFCEQLMKRSVLTQHIKYNHNNIKPQCNICKKTFANPNNLKRHMTIHSGIKDFECDICFKRFHQKITMQTHRLTHMNPLNCSQCDTVFKDKQSLDQHKEDNVCPKTKVKEELMKTVKQEVTTNLGKLLGYACSLCNTMFSVESALERHIESTHIVDPAELLCSECGRVLGSKKDLQMHILTHDRRKSIKRFECSTCGKPCSSQAMLVMHERVHTNERPFSCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCPMCGEAFIDSKYLKKHKLKKHALESINPGSWFNLKVKTEDTESEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01209598;
90% Identity: iTF_01209598;
80% Identity: -