Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978454.1:27179243-27221715[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0029 0.47 12.7 2.1 1 23 307 329 307 329 0.98

2 11 0.00067 0.11 14.7 0.4 2 23 337 358 336 358 0.92

3 11 5.1 8.5e+02 2.5 0.5 1 23 362 384 362 384 0.93

4 11 0.00074 0.12 14.6 0.4 1 23 389 412 389 412 0.97

5 11 0.0012 0.19 14.0 0.5 1 23 416 439 416 439 0.94

6 11 0.072 12 8.3 0.2 2 20 455 473 455 479 0.91

7 11 5.6e-05 0.0093 18.1 0.5 3 23 489 510 489 510 0.98

8 11 2.4e-06 0.0004 22.4 0.8 1 23 563 585 563 585 0.99

9 11 9.7e-07 0.00016 23.6 1.9 1 23 591 613 591 613 0.99

10 11 1.3e-05 0.0021 20.1 0.2 1 23 619 641 619 641 0.98

11 11 0.00011 0.018 17.2 0.2 1 23 647 670 647 670 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0029	0.47	12.7	2.1	1	23	307	329	307	329	0.98
2	11	0.00067	0.11	14.7	0.4	2	23	337	358	336	358	0.92
3	11	5.1	8.5e+02	2.5	0.5	1	23	362	384	362	384	0.93
4	11	0.00074	0.12	14.6	0.4	1	23	389	412	389	412	0.97
5	11	0.0012	0.19	14.0	0.5	1	23	416	439	416	439	0.94
6	11	0.072	12	8.3	0.2	2	20	455	473	455	479	0.91
7	11	5.6e-05	0.0093	18.1	0.5	3	23	489	510	489	510	0.98
8	11	2.4e-06	0.0004	22.4	0.8	1	23	563	585	563	585	0.99
9	11	9.7e-07	0.00016	23.6	1.9	1	23	591	613	591	613	0.99
10	11	1.3e-05	0.0021	20.1	0.2	1	23	619	641	619	641	0.98
11	11	0.00011	0.018	17.2	0.2	1	23	647	670	647	670	0.98

Sequence Information

Coding Sequence: ATGGAGTTTTATTTGCTGGTAGAAAATGTTGAGGACATCAAAGTGTGTCGATTCTGCCTTGTTCTTGACGCTAAGATGTATGACCTACTGAATGGACCTTTGGAAATGTactttgcaaatatttttgggATTCCTGTGTCGAGCACCTTGCATTTCCCTCCATACCTTTGCTACGAGTGTGCCACGCTGGTGAAGAAATTCTACTTATTTAAGGAGCGCTGCTTGAGGGGACAGGCTGTATTGTACAACATCTTACAGAACACTGGgaagTTAACAAAAGATGAAATACAGAAGTTGGACAGAAGTTCTTTAAAGGTAACTTCAAACTTAACCATCAGCAGCACATATTATGCATATAATGATATCAGCCCTGAAGAGGATGATTTGAATACTCAGCAAATTAAAGAAGAACCTATTGTCTCAGATTGCAATAATGGTTTGGAAGTAACAGTGGACATTGGCTCtataaaagaagaagaagaagaagaagaagaagaagaggaggAGGTGGAGAATGACGCAGATTTCTCACCGGCAGAGTTCCAGCATTCCAGTGACGACGAACCTCTCTCCATACATAAGACTATCAAAGAAAAAAGGAAAGGAAAGAAAAGAGGTCGGAAGAAAAAAGAACTCGTAGAATATGAAGAGGACATTgatATAAAACATGAGCCGTCTGAAGAGTCGGTAACCGTGCCTGCACCTCGTAAGAGAGGCCGCCCTCGGAAGTCAGCGCCCCCACCCCCGGCCACAGGGGGGGCGGACCCCCCGCCCACCCGGCGCACCAAGAACACGGGCGGAGTGCACGCTGATGACGTCAACCTCGATGACTACGTCACTATAGTCACATTATCGTTAGAAGAGCAACTGGAAGAGATAGACAAGCGGAAGACGTCGAGCAACTACCTGAACGCTCCCTTCCAGTGCAACCTCTGCTACAAGGGCTTCATAGATACCAACGCGTGGAAACACCACCAAGAGAAACATGATCCGAGCTTGGGCCCGCTGCAGTGCCCCGTGTGCAAGTTCCGGTTCGTGTCGCGGCGCGCGCTGCAGAAGCACGCCGTCAACCACGAGAAGAAGTACGCGTGCAGGGCCTGCGCATTCGTCTCCAAGACcacAACGCAAGCGAAGCAGCATCAGAGGTGGCACAAAGGAGTCACGTATAGCTGTGAATATTGTGACGAAGTTTCCACtaaatggACGTCGTACTTATCTCACGTGCGCATCAAGCACCCCTCGCAGCACATCTGCGGAGTGTGCGGGTATTCGTTCGTCAGCAAACTGGGGCTCACGATGCATAGGACCATGATGCATAAAGACGTGCAAGAGAAGCAAACAGGTTCTGAGCATTCAGGCCCGTACTGTGAAGTGTGCGACGTTAAATTCATATCGACGGAGGCCTACAACCGACACAAGGTCACCTCTGTCAAACACGCCGACTCTAACAGCTTCAGGACAGGTTGCCGAGTGTGCGGCGCCACGTTCTCCGACCCGGAGGAGCTGCGCGTGCACCACCGGCGGGAGCACGCGCGCGCGCGCCCCAAGAACTACGGCAAGAGGAACGACAAGGGGGAGTGGCCGGCAAGCTGCACGCATTGCGGTGATATGATACAGAACGCGCGGGAACAATGGGCGCACTTCCGGCGAGCACATCCTGACAAAGCGTACCCCATACAGAAGAACTATGTTTGTGATATATGCGGCAAGAGCTTCCGGGGCAACGCATTCCTGACGTACCACAAGCGCACGCACAGCTCGGAGCGGCTGTACAAGTGTACTGTGTGCGGGAAGGGGTTCTACAACCGCACCAACCTCAACATGCACTCGCGGACCCACTCCGACACGCGGCCCTACCCGTGCGAGGTCTGCGCTAAGGCGTTCAAGAGCAAGGGCGCGCTCGATCGGCACTACCGAAGCCACACAGGCGTGAAGCCGTACGAGTGTGAGGTGTGCGGGAAGGGGTTCGGCCAGTCGAACAGCCGCAAGCTGCACGTGCGGACTGTGCACCTGAAGCAACCCGCGCCCCACCTGCGCCGCGCTAACCCCCAAGCTCATAAACCTGACCTGAAGCTGCCTCTGCCTCTGCCTGTGTCTGTGCCCCTGCAGGAACACCCCTTCACTCCACTCACGCTCACTGCTAACTAG
Protein Sequence: MEFYLLVENVEDIKVCRFCLVLDAKMYDLLNGPLEMYFANIFGIPVSSTLHFPPYLCYECATLVKKFYLFKERCLRGQAVLYNILQNTGKLTKDEIQKLDRSSLKVTSNLTISSTYYAYNDISPEEDDLNTQQIKEEPIVSDCNNGLEVTVDIGSIKEEEEEEEEEEEEVENDADFSPAEFQHSSDDEPLSIHKTIKEKRKGKKRGRKKKELVEYEEDIDIKHEPSEESVTVPAPRKRGRPRKSAPPPPATGGADPPPTRRTKNTGGVHADDVNLDDYVTIVTLSLEEQLEEIDKRKTSSNYLNAPFQCNLCYKGFIDTNAWKHHQEKHDPSLGPLQCPVCKFRFVSRRALQKHAVNHEKKYACRACAFVSKTTTQAKQHQRWHKGVTYSCEYCDEVSTKWTSYLSHVRIKHPSQHICGVCGYSFVSKLGLTMHRTMMHKDVQEKQTGSEHSGPYCEVCDVKFISTEAYNRHKVTSVKHADSNSFRTGCRVCGATFSDPEELRVHHRREHARARPKNYGKRNDKGEWPASCTHCGDMIQNAREQWAHFRRAHPDKAYPIQKNYVCDICGKSFRGNAFLTYHKRTHSSERLYKCTVCGKGFYNRTNLNMHSRTHSDTRPYPCEVCAKAFKSKGALDRHYRSHTGVKPYECEVCGKGFGQSNSRKLHVRTVHLKQPAPHLRRANPQAHKPDLKLPLPLPVSVPLQEHPFTPLTLTAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -