Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978470.1:13497429-13500386[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.23 38 6.7 3.2 1 23 510 532 510 532 0.97

2 10 7.9e-05 0.013 17.6 0.9 1 23 538 560 538 560 0.99

3 10 2.5e-06 0.00041 22.4 1.7 1 23 566 588 566 588 0.99

4 10 1.2e-05 0.002 20.2 1.0 1 23 594 616 594 616 0.99

5 10 4.9e-05 0.0082 18.3 2.8 1 23 622 644 622 644 0.99

6 10 4.9e-05 0.008 18.3 0.7 1 23 650 672 650 672 0.99

7 10 0.00071 0.12 14.6 2.7 1 23 678 700 678 700 0.98

8 10 1.1e-06 0.00018 23.5 2.7 1 23 706 728 706 728 0.99

9 10 4.2e-05 0.007 18.5 2.4 1 23 734 756 734 756 0.99

10 10 0.0037 0.61 12.4 2.7 1 23 762 785 762 785 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.23	38	6.7	3.2	1	23	510	532	510	532	0.97
2	10	7.9e-05	0.013	17.6	0.9	1	23	538	560	538	560	0.99
3	10	2.5e-06	0.00041	22.4	1.7	1	23	566	588	566	588	0.99
4	10	1.2e-05	0.002	20.2	1.0	1	23	594	616	594	616	0.99
5	10	4.9e-05	0.0082	18.3	2.8	1	23	622	644	622	644	0.99
6	10	4.9e-05	0.008	18.3	0.7	1	23	650	672	650	672	0.99
7	10	0.00071	0.12	14.6	2.7	1	23	678	700	678	700	0.98
8	10	1.1e-06	0.00018	23.5	2.7	1	23	706	728	706	728	0.99
9	10	4.2e-05	0.007	18.5	2.4	1	23	734	756	734	756	0.99
10	10	0.0037	0.61	12.4	2.7	1	23	762	785	762	785	0.93

Sequence Information

Coding Sequence: ATGTGCGACAACAGTGAAAATACTCACACAATGAGCGTAAGTGAGAAAACACATGCAATATTCGATAATGTGATTACTCAAGTGAAAATTGAAAGAGACGACACTGAAGTAATGAGCGACTGTGAATATGCCAACACAATGAGCAGCAGAGATAATGTTAATGCAATGAGCGGCAGTGAAAAGGCTAATGCAATGAACAACAGTGAAAACATTAAATCATTGATTGACAGTGATAATGCAAACTCAACGTCATACAGCAATATCATTCACATAGAAGTTGAGAGTGACTACACTCAGTCTATGAGTGAAAGTGATGACACTTTACAAGATAGTGATAACAATCGCAATATGTGTGACAGTGACAACTCACGCACAACCTATACAGGTGACAACTCTTGTACTATGAGTGACAGTGATAACACTCTTGCAGTGAGCAAAAGTAATAGTACAGAATCTAATGTGCCGGAAATTACCATAGATGTAAACAGTGAATTGAGTGAAAGTGACAAAGCTAACACAATGTGTAATAGTGGCAACATCCACCCAAATAGTAGAATTGACAACACAGAGCCATGCAGTGATAGTATTTGCGTAAAGAGCGATGACAATACAAACACAATTTTCATGAGTGATAGTACTTACGCAATAAGTGAAAGTCAAACTATGTGCAACAATGATAATATCCGCGCAAATAGTGAAAGTAACAACATAATCTCCGACACTAATAACAGTCACGTAAAGAGCGATAATGACAACATACAAACAATGTTCAACAGAGATAGCACTCATGGTATAAGCGAAAGTGGCAAAACTGACGAAATAAGCGAAAATAACAAAGCTCGCGTAAAAGTTGAAACTGACACCACCCATGAAATGAGTGAAACTGACAATAGGTACAACGTGTCGGAAAATGAACAAGtgaaaacacataaaataagccAAACTGACAACATACGCGCATTGAGTGAAAGTTATATCTCTCACGTGAAAATAGAAAGTGACGACAAATACACAATGTGTGATAGGGACAACACCCATGAAATAAGCGAAACTGACAACAGATACACAAGGTCTGACAGTCACGCATTGAATGAATGTTACAGCACTCatgtaaaaatagaaaatgACGATAATAACATAATAGGTGATATTGACAACACTCACGAAATTAGCGAAACTGACCACAGATACACCATGTCTGACAATGACAACAATCCTAAAATAAGTGACTCTCCCAACAGATATGTAACATGTGACAATCAAGCACTGAGTGAAAGTTACAGCTATCatgtaaaaatagaaaaagatGATGAATACTCAATGGGTGACATTGACAATACTCAAGATATGAGTGAAAGTAACAATACTCTGGCAATTAGCAAAAGTGACGACACTCTTGCAAGGAGTGAAAGCAACAACACTCAGGAAATGAGCGAACATGACTCCCTAAACACAACAAACGAAACTGAGAACACTGAATCTCTTCCCATCGAAATTTCCATAGAACTGGGCACAGAATCCAAACCTTTTAAATGTACCATATGTGATTTTAAAAGTGCAAGTAAACCGCAAATTCTACGACATTTCCATAAACACACTGGATATAAACCATTTCAGTGCAATATATGTGGCTATAGCACTACACGCAATTACATCTTACAGCAACACCTCTTAACGCATGCTGGAGTGAAATTATTTACATGCAGCATATGTCAATATAAAGTGTCAACCAAAAGTAACTTAAGCGTGCATATGAAaacacacactggagagaaaccatttaAATGCAACATATGTGACTATGCTAGCACACTTAAGAACACCTTAAATAGACATATGAGAatacacactggagagaaaccgtacaAATGCAGCCTGTGTGACTACACAAGCACACTGAAAAATACATTGAACCGACACATGAAAACtcatactggagagaaaccatacaAATGCACTGTATGTGACTACGCCAGCACTCTGAGTAATACATTGATAAGACATATGCAAACACACACTGGAGAGCGACCTTTTACATGTGATATATGTCATTCTGGATTCGGCAAGAAAGAACATTTGAGAGATCATGTGAGGATACACACTGGAGAGAGACCTTTTAAATGTGATACCTGCCCTCAGTCATTCCGACAAAAGGATCATTTAAAAGACCATGTGAGAATACACACCGGAGAAAAACCATataaatgcagtatgtgtgactataaaagtgcCAGGAAGACCAATCTTAATACACATCTGAAATCACACACTGGTGTAAAACCACACAAGTGCACAGTTTGTCCATATAAATGTGGAAGCAAAAGTGGCTTGAACTCTCACATGGGTAACATGCATCCTGATGTTGTTAAATCGTAA
Protein Sequence: MCDNSENTHTMSVSEKTHAIFDNVITQVKIERDDTEVMSDCEYANTMSSRDNVNAMSGSEKANAMNNSENIKSLIDSDNANSTSYSNIIHIEVESDYTQSMSESDDTLQDSDNNRNMCDSDNSRTTYTGDNSCTMSDSDNTLAVSKSNSTESNVPEITIDVNSELSESDKANTMCNSGNIHPNSRIDNTEPCSDSICVKSDDNTNTIFMSDSTYAISESQTMCNNDNIRANSESNNIISDTNNSHVKSDNDNIQTMFNRDSTHGISESGKTDEISENNKARVKVETDTTHEMSETDNRYNVSENEQVKTHKISQTDNIRALSESYISHVKIESDDKYTMCDRDNTHEISETDNRYTRSDSHALNECYSTHVKIENDDNNIIGDIDNTHEISETDHRYTMSDNDNNPKISDSPNRYVTCDNQALSESYSYHVKIEKDDEYSMGDIDNTQDMSESNNTLAISKSDDTLARSESNNTQEMSEHDSLNTTNETENTESLPIEISIELGTESKPFKCTICDFKSASKPQILRHFHKHTGYKPFQCNICGYSTTRNYILQQHLLTHAGVKLFTCSICQYKVSTKSNLSVHMKTHTGEKPFKCNICDYASTLKNTLNRHMRIHTGEKPYKCSLCDYTSTLKNTLNRHMKTHTGEKPYKCTVCDYASTLSNTLIRHMQTHTGERPFTCDICHSGFGKKEHLRDHVRIHTGERPFKCDTCPQSFRQKDHLKDHVRIHTGEKPYKCSMCDYKSARKTNLNTHLKSHTGVKPHKCTVCPYKCGSKSGLNSHMGNMHPDVVKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -