Pdol010750.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis dolabraria
Gene Symbol
-
Assembly
GCA_963854805.1
Location
OY978444.1:5080687-5111695[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.6 4.3e+02 3.4 1.3 2 23 266 287 265 287 0.85
2 12 0.041 6.8 9.1 0.5 1 21 292 312 292 316 0.92
3 12 0.00031 0.051 15.8 1.0 2 23 416 438 415 438 0.93
4 12 0.00027 0.045 15.9 0.0 1 23 444 466 444 466 0.98
5 12 0.0082 1.4 11.3 0.2 1 23 474 497 474 497 0.90
6 12 3e-07 4.9e-05 25.3 3.7 1 23 502 524 502 524 0.98
7 12 0.00036 0.06 15.6 3.1 1 23 530 552 530 552 0.94
8 12 0.00013 0.021 17.0 2.7 1 23 558 580 558 580 0.98
9 12 4.2e-08 7e-06 27.9 0.4 1 23 586 608 586 608 0.98
10 12 0.0029 0.48 12.7 6.4 1 23 614 636 614 636 0.99
11 12 7.4e-05 0.012 17.7 1.9 1 23 679 701 679 701 0.99
12 12 1.4e-05 0.0024 20.0 6.7 1 23 707 730 707 730 0.96

Sequence Information

Coding Sequence
ATGGAAGTGTTTCTATATAACTCAACTGTTTGTAGATTATGCGGTGAAGAAAACGATAATGgctcttttttatatttagctGAAGAAAATAACCATAATATCAGTGAATTAGTGAATGCGTATTTGCCTATCAAGGTATCGGACGATGGTCGACTACCTCGTACCATATGTCCTGGATGCACTATTCAGCTGGAAGCCACCGTAGAGTTCATCAATTTGATTGTCAATGGACAGAAAGTAATTCGAGCCCTATATCAAAGAGAGCTGGAgtacaaaaaaacaattctgAATGAACCAGACAATGATCAAGAAAATGCTGTAGATAATGTTATTAATGAAGTGAACGTTGAAGATGGGGCATACCATCCTGACCATGCCATTTCTCTGCAAGTGGCCGGGTTGGACAAGCCCAAGCGAAAGCGCGGTCGCCCTCCGAAAAAGCACAAAACGCCTGAGGAATTGGCCCAAGAGGCTGCGGCCAAGGAACGTGAACTTCTGTCAGCCAAGCAAGAGAAGAAGGAAGAAGATCTGTCTGGCAAGAGGAAGAGGAAAACTCCTACAAGGTTCAAGGAAGTTGTGCAGGGAAAGGAATTAGAAAAGATCTTCAAAGAAGAGGGCATGACAGATGGTGAAGAAAGTGAACCTGAAATTAATCCTGACTTACAATCCACAAATGCTGAACCAGGTCCTAAAATACCTGAAGTTATTGGTCACACTGATACGGGTGAGCTCGTGGTTGTTGTGAAAGGCAAGGGTCGAGGAAGACCTAAAGGTCGACTACATCAAAAGCTTCAAACCTGTGCCATATGTGACAAAGAGTTCTTCTGCTCCGGACGGTATATGTCTCACATCGCACAGCACGGGCCTGTCATGTACCAGTGTCGGGAGTGTTCGGGAACCTTCGGCACTCGGCTCGACTTCACCAAGCACCAGGAAGAGATGGGCCATCAAGGGCAGACTGTCATTCCATGTGAGAAGAAACACGATCCTTCTGAAGCAGACCCGCTGCAGCCTGACCCTGAGCCCACCCCGGCCAATAACGTCGATGTAGTTACCGCTGGTTCTCTACCGGATTTGAACCCAGAAGTACCCAGCGAAGCCAACACTGATAATGTTGTGTTCCTCAAAATGCCGGATCTTAATGCCGAGAATGAAACAGTCGAAGTGGAAGTAGAAGTCGATAAGATGGACGAAACAAAGCCTCAAGAGTCGGCTGAGAATAAAACCCAAGTCAAGCCGAAGCTGCCTTGCCCGCACTGCGACAAAATGTTCAGCAACAAGCAGAGCAAGTCTTTGCACATCAAGGCGGTACATCGAGGCGAGCGTCCGTATCAATGCAAGGAGTGTGGTGCTGCGTTCGCGTACCCGAGGGCACTGGCCCTGCATGCACTCAAACACCGCACAAAGGCATCTGCAGGGTACGCGTGCGACCTCTGTGGGAAGGTGCTGAACCACCCGTCCTCAGTGACGTACCACAAGGAGGCGGAGCACGCGGGACAGAAGTATGTCTGCAACAAGTGCGGCAAGACGTTCAAACACAAGCAACTGCTGCAGCGGCATCAGCTCGTCCACACGGAGATTCGCCCTTTCCACTGCAAGGTTTGCAACGCGACGTTCAAAACCAAAGCGAACCTGTTCAACCATTCCCTGCTACACTCCGGCATTAAGAAATACTCGTGCGAACTTTGCAAGCAGAGGTTTGCGCACAAAACTAGTCTCACGCTCCATTTGAGGTGGCATAACGGTCAGAAGCCGTACTCTTGCAAGGAGTGCGGCAAGGCGTTCAGCCAGAAGGGCAACCTGTCGGAGCACCTGCGCATACACACGGGCGAGAAGCCCTTCCAGTGCGCGCACTGCCCTCGCAAGTTCACTACCTCCTCGCAGCACCGCCTGCATCTCCGCAGGCACGCCACGCATGCCGACAAGCCGTTCTTGATAACGGCCCGCGACACGAAGCCCCCTGCCCCCGCGAGTACCGCGCAGAGCAAGCCGGCCCCGGCGAGCCCGTTCCCGCACTCAGGCGTGCCCGGCGCGTACAAGTGCGGATGGTGCGGCCGATGCTGCCCGACGCGGTGGGCGCTAGCCAAGCACGCGCGGCGACACACTGGCGAGAGGCCATTCAAGTGTCCGCACTGCCCTAGAGCCTTCTCAGACTGTTCGAACCTTAACAAGCATAAAAAGCACGTCCACAAACAAATCAGCCTGTTAGCCAATCAGCGGCCAGAACCCCCCTCGCTGCAGATACTCCAGGGAGCCGATGCACAGGAGGAAGGCACGGAGTTCGCAGTGGTGGAGACTACACACGACGGAGTCGAGGAGAGAGTCATATATGTTACATATGACGTCGATGACCCGCAGTCTCCGGACTATCAGCTAGTTGATCCGGAGCAGGCAGAAGAGCTGTTGGAGCAATCTAAGGTGATATCCACCCGGACGTTAAACGGCACCGAATCCCTCCTGCTGCAGAGCAAACTGGATACGCAGGAGGACTCCGGTCCTGCAGTGCAGGAACACATGTCGGTGACGGACGAGCAAGGCAACCCGCTGCACTTCACGATGCAGGACGGCACGCAGCTCGCGATCACGTCGCTCGACGGGCAGTCCTTGCAGCAGGAGGAGCCGAGTACGATAATGCATCAGGTGACCGTTCAGAAGCCCCAAGAGCAGCCGGCCGGCTCCCCAGTCACTTATTTCTACGAAGCTTACGAATACTAG
Protein Sequence
MEVFLYNSTVCRLCGEENDNGSFLYLAEENNHNISELVNAYLPIKVSDDGRLPRTICPGCTIQLEATVEFINLIVNGQKVIRALYQRELEYKKTILNEPDNDQENAVDNVINEVNVEDGAYHPDHAISLQVAGLDKPKRKRGRPPKKHKTPEELAQEAAAKERELLSAKQEKKEEDLSGKRKRKTPTRFKEVVQGKELEKIFKEEGMTDGEESEPEINPDLQSTNAEPGPKIPEVIGHTDTGELVVVVKGKGRGRPKGRLHQKLQTCAICDKEFFCSGRYMSHIAQHGPVMYQCRECSGTFGTRLDFTKHQEEMGHQGQTVIPCEKKHDPSEADPLQPDPEPTPANNVDVVTAGSLPDLNPEVPSEANTDNVVFLKMPDLNAENETVEVEVEVDKMDETKPQESAENKTQVKPKLPCPHCDKMFSNKQSKSLHIKAVHRGERPYQCKECGAAFAYPRALALHALKHRTKASAGYACDLCGKVLNHPSSVTYHKEAEHAGQKYVCNKCGKTFKHKQLLQRHQLVHTEIRPFHCKVCNATFKTKANLFNHSLLHSGIKKYSCELCKQRFAHKTSLTLHLRWHNGQKPYSCKECGKAFSQKGNLSEHLRIHTGEKPFQCAHCPRKFTTSSQHRLHLRRHATHADKPFLITARDTKPPAPASTAQSKPAPASPFPHSGVPGAYKCGWCGRCCPTRWALAKHARRHTGERPFKCPHCPRAFSDCSNLNKHKKHVHKQISLLANQRPEPPSLQILQGADAQEEGTEFAVVETTHDGVEERVIYVTYDVDDPQSPDYQLVDPEQAEELLEQSKVISTRTLNGTESLLLQSKLDTQEDSGPAVQEHMSVTDEQGNPLHFTMQDGTQLAITSLDGQSLQQEEPSTIMHQVTVQKPQEQPAGSPVTYFYEAYEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01209579;
90% Identity
iTF_01209579;
80% Identity
-