Pdol030131.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- ZFX
- Assembly
- GCA_963854805.1
- Location
- OY978453.1:30127461-30128888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.037 16.2 0.3 1 23 163 185 163 185 0.97 2 11 1.7e-06 0.00029 22.9 0.9 1 23 191 214 191 214 0.97 3 11 8.3e-07 0.00014 23.9 0.3 1 23 222 244 222 244 0.98 4 11 4.6e-05 0.0076 18.4 0.2 1 23 250 272 250 272 0.98 5 11 0.00055 0.092 15.0 1.6 1 23 278 300 278 300 0.97 6 11 2.6e-06 0.00043 22.3 0.5 1 23 306 328 306 328 0.98 7 11 4.2e-07 6.9e-05 24.8 2.7 1 23 334 357 334 357 0.95 8 11 3.5 5.7e+02 3.0 0.2 6 20 364 378 362 381 0.70 9 11 0.063 10 8.5 0.7 2 23 388 410 387 410 0.94 10 11 0.02 3.4 10.0 0.6 1 23 416 441 416 441 0.94 11 11 0.00022 0.036 16.2 0.8 1 23 447 470 447 470 0.95
Sequence Information
- Coding Sequence
- ATGAATATGATACTGTGCCGATTTTGTTATGAAAACCAGGGaagtacaaatatatttcaaataaaccaTACACGAATGTCGATACACGATAAAGTCAAGATTTGTTGTAGGACTGTAGAAATTAGGGAATATGATGGGCTACCACAGTTTATTTGCAGTACTTGCGAACTGGAACTCAATACTTGCTATCAGTTTGTTCTAAAATGTGAAGCAGCTGATAAGAGAATACGCTCAATACTGTTATTTGGCGAGTCCTTAAATGCTACCCCTACAGATGTTTGTAGTCCAAAGGCAGAAGTGAAAAAAGAGGTTGATGATCTCGATGACTTTTTCAATACTGATGAACCGCTCGCATACACTCTAGGCGAGATCAAGCAAGACGATGTTCATAAGTTAGATCTACATAAGCAAGACTTACAAATCGATTTCAGTGTGACCAATGGTAAGAAATGTTACAAGAAACCAGTAAAGTCTAACAAAAAGAGTTTTGTGTGTTCTGTTTGTGGCAGAAAATCTCTAAACTCATCAACTTTAGCCATACACATGCGCTCACATTCTAATGACAGACCATTTCAGTGCCCTTCTTGTGAGAAGACATACAAAGATCAAGGTACTCTGAAACGTCATATAGAAAGAAACCATTTACAGAAGAGGGAACGAAAGTTTATATGTGAAAACTGTGGGAAAGGTTTTTACTCCAAGTCTGATATTAAAGTACACATGAGAGTACACACAGGTGAAACACCATACATCTGTCCCATTTGCCCAGGTCGGTTCACACAGTTAAGCGCAATGTTAAGGCACAAGAGACGGCACACTGATGAGAAGTCCCATGTATGCTCCACTTGCACCAAACCATTTTGGACTAAAGAAGAACTGAAGAAACATCTCAGTGTACATGACAGTGTTAGACAATATTCCTGTCCGATTTGCCAAGTTCAATTCAAACAGAAAGGCAGTATTCAAAAACACATGAGAATACATTCAGAACCCAATCAGTTTATCTGTAACCACTGTGGAAAGACTTTCAATAACAAAGGCAATCTCAAAAGCCATGTAGAGAGGAGGCATTCAGAAAAATCTGGTTTTTGTAATATCTGTACCAAGAATGTTTCCAACATTGAGGTCCACATGTGGCGACACACTGGACAAAGACCCTTGAAGTGCGAGTTCTGTACTAGCAGTTTCTATGAGTCAAAAGCTTTGGCCCTTCACATCAACTTCAAACACAAAAAGACTGATAAGTTCAAGTGCAGTGTAGAGAATTGCACAAAAACCTTTCCCTCAAAGCCAATGCTAGAGTTCCATATTGCTAAGTTTCATGAGCAGCAGACTCCTTATCCTTGTCTAAGATGTTCCAGAGGGTTTTACAGAAAAAATGACCTATCTAGGCATATGCTTGGCACCCATAAAGAAAAACTGGCATAA
- Protein Sequence
- MNMILCRFCYENQGSTNIFQINHTRMSIHDKVKICCRTVEIREYDGLPQFICSTCELELNTCYQFVLKCEAADKRIRSILLFGESLNATPTDVCSPKAEVKKEVDDLDDFFNTDEPLAYTLGEIKQDDVHKLDLHKQDLQIDFSVTNGKKCYKKPVKSNKKSFVCSVCGRKSLNSSTLAIHMRSHSNDRPFQCPSCEKTYKDQGTLKRHIERNHLQKRERKFICENCGKGFYSKSDIKVHMRVHTGETPYICPICPGRFTQLSAMLRHKRRHTDEKSHVCSTCTKPFWTKEELKKHLSVHDSVRQYSCPICQVQFKQKGSIQKHMRIHSEPNQFICNHCGKTFNNKGNLKSHVERRHSEKSGFCNICTKNVSNIEVHMWRHTGQRPLKCEFCTSSFYESKALALHINFKHKKTDKFKCSVENCTKTFPSKPMLEFHIAKFHEQQTPYPCLRCSRGFYRKNDLSRHMLGTHKEKLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209580;
- 90% Identity
- iTF_01209580;
- 80% Identity
- -