Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978467.1:7427785-7442912[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.16 26 7.3 0.6 1 21 87 107 87 108 0.96

2 32 0.17 28 7.1 0.4 3 23 137 157 136 157 0.96

3 32 0.047 7.8 8.9 1.8 2 23 180 201 179 201 0.96

4 32 0.0058 0.96 11.8 0.1 1 23 205 227 205 227 0.96

5 32 0.2 33 6.9 0.4 1 23 232 254 232 254 0.95

6 32 0.0019 0.32 13.3 2.0 1 23 260 283 260 283 0.95

7 32 0.00044 0.073 15.3 5.0 1 23 290 313 290 313 0.98

8 32 6e-05 0.0099 18.0 3.8 2 23 319 340 318 340 0.96

9 32 0.0075 1.2 11.4 0.1 1 23 423 446 423 446 0.92

10 32 1.4 2.3e+02 4.3 1.4 2 23 473 494 472 494 0.96

11 32 0.12 20 7.6 1.9 1 23 516 538 516 538 0.98

12 32 0.00038 0.062 15.5 0.3 1 20 542 561 542 563 0.93

13 32 0.12 20 7.6 0.1 1 23 572 595 572 595 0.96

14 32 0.024 3.9 9.8 0.1 1 23 601 624 601 624 0.91

15 32 0.0023 0.38 13.0 0.6 1 23 631 654 631 654 0.91

16 32 0.0038 0.63 12.3 1.1 1 23 663 685 663 685 0.96

17 32 0.54 89 5.6 1.5 1 23 738 760 738 760 0.94

18 32 0.22 36 6.8 0.2 3 23 786 807 784 807 0.87

19 32 0.023 3.8 9.9 1.2 2 23 830 851 829 851 0.97

20 32 6.5e-05 0.011 17.9 0.3 1 23 855 877 855 877 0.98

21 32 0.32 53 6.3 0.1 1 23 882 905 882 905 0.93

22 32 0.023 3.8 9.9 2.5 1 23 911 934 911 934 0.97

23 32 0.74 1.2e+02 5.1 1.1 1 14 940 953 940 957 0.88

24 32 1.5 2.5e+02 4.1 0.1 2 23 1035 1057 1034 1057 0.89

25 32 0.00035 0.058 15.6 0.9 1 23 1079 1101 1079 1101 0.98

26 32 1e-05 0.0016 20.5 0.9 3 23 1107 1127 1106 1127 0.97

27 32 0.0074 1.2 11.4 0.7 2 23 1136 1158 1135 1158 0.95

28 32 0.15 24 7.3 7.9 1 23 1163 1186 1163 1186 0.95

29 32 0.014 2.3 10.6 1.5 1 23 1192 1215 1192 1215 0.97

30 32 3.2e-05 0.0053 18.9 1.4 1 23 1221 1243 1221 1243 0.98

31 32 9.8e-06 0.0016 20.5 0.5 1 23 1249 1271 1249 1271 0.99

32 32 0.00076 0.13 14.5 5.3 1 23 1277 1299 1277 1300 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.16	26	7.3	0.6	1	21	87	107	87	108	0.96
2	32	0.17	28	7.1	0.4	3	23	137	157	136	157	0.96
3	32	0.047	7.8	8.9	1.8	2	23	180	201	179	201	0.96
4	32	0.0058	0.96	11.8	0.1	1	23	205	227	205	227	0.96
5	32	0.2	33	6.9	0.4	1	23	232	254	232	254	0.95
6	32	0.0019	0.32	13.3	2.0	1	23	260	283	260	283	0.95
7	32	0.00044	0.073	15.3	5.0	1	23	290	313	290	313	0.98
8	32	6e-05	0.0099	18.0	3.8	2	23	319	340	318	340	0.96
9	32	0.0075	1.2	11.4	0.1	1	23	423	446	423	446	0.92
10	32	1.4	2.3e+02	4.3	1.4	2	23	473	494	472	494	0.96
11	32	0.12	20	7.6	1.9	1	23	516	538	516	538	0.98
12	32	0.00038	0.062	15.5	0.3	1	20	542	561	542	563	0.93
13	32	0.12	20	7.6	0.1	1	23	572	595	572	595	0.96
14	32	0.024	3.9	9.8	0.1	1	23	601	624	601	624	0.91
15	32	0.0023	0.38	13.0	0.6	1	23	631	654	631	654	0.91
16	32	0.0038	0.63	12.3	1.1	1	23	663	685	663	685	0.96
17	32	0.54	89	5.6	1.5	1	23	738	760	738	760	0.94
18	32	0.22	36	6.8	0.2	3	23	786	807	784	807	0.87
19	32	0.023	3.8	9.9	1.2	2	23	830	851	829	851	0.97
20	32	6.5e-05	0.011	17.9	0.3	1	23	855	877	855	877	0.98
21	32	0.32	53	6.3	0.1	1	23	882	905	882	905	0.93
22	32	0.023	3.8	9.9	2.5	1	23	911	934	911	934	0.97
23	32	0.74	1.2e+02	5.1	1.1	1	14	940	953	940	957	0.88
24	32	1.5	2.5e+02	4.1	0.1	2	23	1035	1057	1034	1057	0.89
25	32	0.00035	0.058	15.6	0.9	1	23	1079	1101	1079	1101	0.98
26	32	1e-05	0.0016	20.5	0.9	3	23	1107	1127	1106	1127	0.97
27	32	0.0074	1.2	11.4	0.7	2	23	1136	1158	1135	1158	0.95
28	32	0.15	24	7.3	7.9	1	23	1163	1186	1163	1186	0.95
29	32	0.014	2.3	10.6	1.5	1	23	1192	1215	1192	1215	0.97
30	32	3.2e-05	0.0053	18.9	1.4	1	23	1221	1243	1221	1243	0.98
31	32	9.8e-06	0.0016	20.5	0.5	1	23	1249	1271	1249	1271	0.99
32	32	0.00076	0.13	14.5	5.3	1	23	1277	1299	1277	1300	0.96

Sequence Information

Coding Sequence: ATGTGGCTAAAATTGGGCTACTTATCCAATAGACAAGCGTGGAAGATGATTGgAAGACACGGACAAACCGGCTTAGTGACAGATGAACATGTAGAAAACAATGTAACAGTAAAAGAAAATGACTATTATACAAAAATTGAGAGTAAGCCCAAGTTTCAGAGAAGTGCGAGAGCTGAAGCAAGGATAGCGACTAAGAAGAACGCAACTTCTATTCTGGAATGTTGGACATTTTGTCCTTTCCGGTGGACTAAGAACAGATTTAAATGTGCGTTCTGCGAAGCGGATTTTACGGAATGTACCTCCCTTCGAGACCACGTCAGGATTTGTTCTACTCAGCATAGTATAAAAGACgtatacaaaaaatttaaagaaatgacGCTCATTAATGTTGACGTCACGGATGCTATTTGCTGCCTTTGCTCAACTCCTTTTATTGATGTCTCACAAATGCGTGATCACATCATACAACATGACTTTGAATTCGATACTAAGCATCCTGATGGCGTACTGCCATTTTCCTTAGACAAAAATTGTTGGATGTGCACGATTTGCCATGAAAAGTTCAACaattttcttaaaatgtatGAGCATATGAACGTTCACTACCAGCATTACATTTGTGCGATATGTGGAAAGGGCTATATGACAGCACAGCGTTTGAGAAAGCATTCCGAAGTTCATATATCGGGATCGTTTCCTTGTAACTTGTGCACTAGATTCTTTACCATGCGCGCTGCAAGGGACGCTCATAAGGCAACACACCGCAAAAATGACCGCTACGAATGTCCCCATTGCAATATTCGTTTTCGTAGCTATTACGACAGAATGACGCACTTAAAAGATGCTCACAGTGAGAAGGAAGTTGTTTATAAGTGCTCGCATTGCGACTTATCCTTCAAAACAAGCGGAAGCAGGGCGCATCACGTGCGAACTACTCATTTCCCGACACAACTAAGTTGTGCATTCTGCGAATGGcatttcaaaactaaatatgaACTCAAAAGGCACATGAAGAAACACACCAGAGAGAGAAATTTACATTGTAATATATgtCCCCAAAATAGTGTAGGCGTGCAAAACATGAGTAGAAAAGGTAAATGGCTTAAGGAAAACGTTAGTGACCGTCAAATGCGTAGACGACGTAGAGCTAACAACGAGTTACCAGAGGAATCTGAACAAAGAATTAAGAAAACGATGATGAGACGAAATACGATGATCCTGCTAGAATGTTCCACCGCCTGGGCCTTTCGGTGGTTCCATGGCGCATTCTACTGTTCTTACTGTGATGCTAAGTTTGTAGACTCGCAACCCTTAAGAGAACACGTCGTTATTAGCCATTTAAACCAACTGCCTACTAAACGTATTTTTGCCAAACTTACTGAAAATAACATGGTCAAAATTGACGTTAGTGATCTTCGCTGTAGATTATGTCATCAAACTCTAAATGGAATAGAATCACTAAAGTATCACGTCCAATCCCacggaaaaaaaataaacgaagGTTACCATGATGGAGTGCTGCCTTTTAAACTAGATGACAGTGGATTTAGTTGTCAATTATGCTCAACCCACTTTGTAAGATTTGCCAGAATTAACGAGCATATGAACATACACTATCAGAACTATGTGTGTGATGTCTGTGGAAAAGGATTTATTTCCAAATCGCGCTTTAGGGCTCACGCTCATACTGAGGAAGGTCCTAAACTAGGAAAGTATCCGTGTGATATTTGCgaagaaattttaaatactcCAGTAGAACGAAAAAAGCATAGAACACGTGTACATCGGAAAGGTGTCAAGTACATATGCCCAAGATGTCCCGAAGTTTTTAAAAGTTATGAAGCTAGAGTAAAACATCTGGTTAACATTCATGCACAGAAAGTTCTCGACTATATCTGCAACGTTTGTGGAAAGTCATTCAATTCTAATACGAAACGAGCTGGACATTACAAATTGGTTCATACTCCGTCAGCACAGGAAAATAAACATCAATGTGATCAATGCCTTGCAGAATTTGTTAGCAAATCTGAATTAGCTAGACACACTTTTTCTCACAgaTCGGACAGCACCGAAACTGATGTCGGCTCATCGTCCACAGACGCGCCCAAAATCCTTTGGAAGCGTAGAAGGATACTCTTAGAAGACAAAGCTAATGCAGCTTTGCTCGTAGAACACTCGAATGCCGTAGTTTTCAGATGGCAAAGAGGAAAATTCATGTGCGCATATTGTCCAAAGATTTGTGTCAATATTCATGAAATACGGTCCCATTCATCCGTACACAACAGGCTTGACATATTTGAGAATCCTCAAGTCCGGCACCTTTTTCCCTTAAAGGTCGAAATAACAAATTTATCTTGCATTATTTGTGGTATTTCAACAAATAACATCGATCACCTGAAAGTTCATCTATCAGACGTTCATTATATATCAATCGATACAAATCATACCGATGGCATTATTCCTTTTTATTTAACCGGAAACGACCTACGGTGTGTTCTTTGCGACATGCAATTCAATAAATTCATGACTCTTTTTATTCATATGAATAAACACTATCCAAGTTTTGTGTGTGACACATGTGGGAAAGCCTATTCCGGACAAAATAAACTGCGGTCACACCAGGCCATGCATGAAACTGGGGAATTCAAATGCTCTCAATGTGATGTGGTTTTACCAAATCGAATAGCTAGGAACAGACATGTGAACGATGCTCATGGTCCAAAAGACAGGTATCGTTGCCCCATTTGTGATGATCACTTTGATTCTTATCACAATCGTTTACGGCACCTGAATATCGTACATGGAGAAAAGACTGAGTACAAATGCAGCTATTGTCCTGCTGTGTTCATCAGCTGTGACGAAACAATAAAAAGGAGGCTGATCCGCAAGTTTGATGACGAGAGAGACAATGCGGCTATTATTGTAGAATATTCCAATGTTTGTCCTTTTAAATGGGATCGCGGTGCATTCGCTTGCTTGTATTGCTCCTTGTCCTCAGCCGATTTTGGCCCTATCAAACAACATTCCGTTAGCCATACCAACAGAATAGAAAGCATTCGACGACCACGCGGCGTCACTATCAAAGCTGATGTTACTGATTTAAAATGTAAGCTTTGCAACCgaaatattaaagatatacCGACCCTCGTGGATCATTTAATAGATGTGCATAAAAAACCTCTTCAGAAAAAATACGGACCAGGCGTTACCCCTTTCCTTCTTAACGGGGAAGTCTTTAAGTGCGCGGTCTGCAACCTATCTTTCGAAAgatttctaaatttaaataagcATTTGAATGAACATTACCCCGAAAACATATGCTCGGAATGCGGGAAATCTTTTTcacaattaagcaggcttaagAGCCATCAAGTTACACATAAAAAGAAGATCCAACTGAGTTCTAGATGCACGAAATGTGGTGAAAATTTCGCATCGTTACGTGAAAGAAATAAACATTTGATGTTAGAACATGGCGTTTTGAAGCACAAGTGTCAGTATTGCCAcgaatcatttaaatattatcatgaCAGGGTGAAACACTTGAAGGAAATTCACAATAAAACTATAGAATATCGTTGTAGTATGTGTCCAGCTGtatttatactatgtagttatAGAACAAAACATATACGAGAGATGCATCTGAGGGAGGAACGGTATAGCTGCTCAGTATGTCCTTCTAGATTCACTAGAGCTAGTGGGTTACATAGACATATGATAAAACATACCGGTGTTAGAAAGTACCAATGTCAAGTGTGTAAAAAAGCATATGGGCGAGCAAACACGTTGCGAGAACACATGCGGATACATAACAACGATAGGAGATTCGTTTGCGCGCACTGTGATAGTGCATTTGTTCAGAAATGTAGTTTGAAGGGTCACATGAGAACTCATCATCCTAATGCTGAACCATTGCCATCTGGGAATATTCGTCATTAA
Protein Sequence: MWLKLGYLSNRQAWKMIGRHGQTGLVTDEHVENNVTVKENDYYTKIESKPKFQRSARAEARIATKKNATSILECWTFCPFRWTKNRFKCAFCEADFTECTSLRDHVRICSTQHSIKDVYKKFKEMTLINVDVTDAICCLCSTPFIDVSQMRDHIIQHDFEFDTKHPDGVLPFSLDKNCWMCTICHEKFNNFLKMYEHMNVHYQHYICAICGKGYMTAQRLRKHSEVHISGSFPCNLCTRFFTMRAARDAHKATHRKNDRYECPHCNIRFRSYYDRMTHLKDAHSEKEVVYKCSHCDLSFKTSGSRAHHVRTTHFPTQLSCAFCEWHFKTKYELKRHMKKHTRERNLHCNICPQNSVGVQNMSRKGKWLKENVSDRQMRRRRRANNELPEESEQRIKKTMMRRNTMILLECSTAWAFRWFHGAFYCSYCDAKFVDSQPLREHVVISHLNQLPTKRIFAKLTENNMVKIDVSDLRCRLCHQTLNGIESLKYHVQSHGKKINEGYHDGVLPFKLDDSGFSCQLCSTHFVRFARINEHMNIHYQNYVCDVCGKGFISKSRFRAHAHTEEGPKLGKYPCDICEEILNTPVERKKHRTRVHRKGVKYICPRCPEVFKSYEARVKHLVNIHAQKVLDYICNVCGKSFNSNTKRAGHYKLVHTPSAQENKHQCDQCLAEFVSKSELARHTFSHRSDSTETDVGSSSTDAPKILWKRRRILLEDKANAALLVEHSNAVVFRWQRGKFMCAYCPKICVNIHEIRSHSSVHNRLDIFENPQVRHLFPLKVEITNLSCIICGISTNNIDHLKVHLSDVHYISIDTNHTDGIIPFYLTGNDLRCVLCDMQFNKFMTLFIHMNKHYPSFVCDTCGKAYSGQNKLRSHQAMHETGEFKCSQCDVVLPNRIARNRHVNDAHGPKDRYRCPICDDHFDSYHNRLRHLNIVHGEKTEYKCSYCPAVFISCDETIKRRLIRKFDDERDNAAIIVEYSNVCPFKWDRGAFACLYCSLSSADFGPIKQHSVSHTNRIESIRRPRGVTIKADVTDLKCKLCNRNIKDIPTLVDHLIDVHKKPLQKKYGPGVTPFLLNGEVFKCAVCNLSFERFLNLNKHLNEHYPENICSECGKSFSQLSRLKSHQVTHKKKIQLSSRCTKCGENFASLRERNKHLMLEHGVLKHKCQYCHESFKYYHDRVKHLKEIHNKTIEYRCSMCPAVFILCSYRTKHIREMHLREERYSCSVCPSRFTRASGLHRHMIKHTGVRKYQCQVCKKAYGRANTLREHMRIHNNDRRFVCAHCDSAFVQKCSLKGHMRTHHPNAEPLPSGNIRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -