Pdol053009.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978467.1:8574832-8584870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.29 48 6.4 0.1 1 23 37 59 37 59 0.94 2 38 0.0031 0.52 12.6 1.8 2 23 128 150 127 150 0.94 3 38 0.0046 0.76 12.1 7.0 2 23 156 177 155 178 0.94 4 38 0.083 14 8.1 1.6 1 23 182 205 182 205 0.97 5 38 0.33 55 6.2 0.9 2 23 208 230 207 230 0.92 6 38 0.35 57 6.2 0.1 2 19 237 254 237 257 0.88 7 38 0.025 4.1 9.8 3.9 1 23 308 331 308 331 0.96 8 38 0.72 1.2e+02 5.2 0.1 2 23 362 384 361 384 0.94 9 38 0.02 3.3 10.1 2.9 1 23 405 428 405 428 0.96 10 38 0.00016 0.026 16.7 1.1 1 23 433 456 433 456 0.95 11 38 0.0012 0.2 13.9 0.2 1 23 463 486 463 486 0.95 12 38 0.017 2.8 10.3 0.1 2 23 492 514 491 514 0.93 13 38 0.00037 0.062 15.5 0.9 1 23 518 541 518 541 0.96 14 38 0.0024 0.4 13.0 0.8 2 23 548 569 547 569 0.96 15 38 0.029 4.8 9.6 4.2 1 23 604 626 604 626 0.97 16 38 1 1.7e+02 4.7 0.1 3 23 652 673 650 673 0.93 17 38 0.87 1.4e+02 4.9 2.6 2 23 694 716 693 716 0.91 18 38 0.24 40 6.7 0.3 1 23 721 744 721 744 0.97 19 38 0.0038 0.63 12.3 2.0 3 23 751 772 749 772 0.92 20 38 9.1 1.5e+03 1.7 0.3 2 20 792 810 791 812 0.93 21 38 0.44 72 5.9 6.6 1 23 856 879 856 879 0.96 22 38 0.24 41 6.6 0.1 3 23 908 929 906 929 0.95 23 38 0.051 8.5 8.8 0.0 3 21 955 973 954 976 0.90 24 38 0.00059 0.098 14.9 0.1 2 23 982 1004 982 1004 0.96 25 38 0.0013 0.21 13.8 2.7 2 23 1009 1031 1008 1031 0.95 26 38 0.015 2.5 10.5 0.7 1 23 1036 1059 1036 1059 0.96 27 38 1.4e-05 0.0024 20.0 3.9 1 23 1063 1086 1063 1086 0.97 28 38 0.056 9.2 8.7 0.2 2 23 1093 1114 1092 1114 0.96 29 38 0.12 20 7.6 0.2 1 23 1171 1194 1171 1194 0.97 30 38 0.14 23 7.4 0.2 3 23 1226 1247 1226 1247 0.97 31 38 0.12 20 7.6 1.9 2 23 1270 1291 1269 1292 0.94 32 38 0.0027 0.44 12.8 1.2 1 23 1297 1320 1297 1320 0.97 33 38 0.22 36 6.8 0.2 1 23 1325 1348 1325 1348 0.91 34 38 0.00078 0.13 14.5 0.8 2 23 1354 1376 1353 1376 0.94 35 38 0.00042 0.069 15.4 0.1 2 23 1384 1406 1383 1406 0.97 36 38 0.29 49 6.4 0.0 2 23 1413 1434 1412 1434 0.95 37 38 1.3e-06 0.00021 23.3 0.7 1 23 1440 1462 1440 1462 0.95 38 38 7.1e-06 0.0012 20.9 1.9 1 23 1468 1491 1468 1491 0.97
Sequence Information
- Coding Sequence
- ATGCCGCTCTATTCTACGCTGGTACGGAATCTAAGCAAAGAACGAAGGAGAAGCCTCGAGATTTTGTTCAACTACACAACTATAATTCCTTTCAAATATCGTGGGAAATATTTGTGCTTTTTCTGTGGCATTGATGTGGAGAACAGAGAGCAATTGATACAGCACAGCCAAATTCATTTACCATGTTGCATGGATGATTGCTCGCTGAGAAATGCCAGAAAACTTGTCAGTGTTGATGTGTCGGATGTAGGATGCAAAGTTTGCTttgaaaaatttgaaaatattcctGATATAGGATTTCATTTAGTGCGTAAACATGACCAGCCATATGACGGGGATGTTATGTCTGATTTTTTTGCAACATACAGACTAATTGATATGAAATGTCTCGCTTGCGGCgaggtatttaaatatttcaaaaacctGGTCCATCATATGAATAATAAAcacttaaatatgtatttagaaTGTGACCATTGTCATTCGAAGTTTAACAGAAAGCAGGATCTGCAGATGCATATAAGAAATCATCATAGGAATGAGTATCAGTGCTCCAAATGCCTGATACTGTTCGATTCGCACGCAGGGTTAATTAGGCATAAGAATAAGTCCCACATATCTCAGTGCAATCTATGTTTCAAGGCATTTTCCTCATTGGAAATAAGattaaaacatatgaaaaatgAACACAACATAGCAGCTGGTGGAACTTGTGGCTTTTGTAGCAAAGTTTTCAATACTAAATATGGGATTTTAGACCATGCTGCTAAGTGTACAGCTGTTGATGAAGGTAAACCTATCGAAATAACTGCGGAAACAAATAATGATGCAGCCGCATACGATGTTAGACCCGTAAGAGCAGACCTTGCCTATATCTTTAACAACACTACTGTTATGCCTTTTAAAGTTAGTCATGGAAAATTTCGGTGCTTTTATTGCACGAATGAATTTGACAAGTGTGAAAATCTCAAGCGCCATACTAGCGTTGCACATCCAGTTTGCGATGTGAAATTTAAATCGATGAAGTTAAAAAGTCTGACTCCTTCAAAAGGAATGAAGATCAAGATTGATACGTCATTGCTACAATGCAAGATGTGTTCAGTACAAGCAACTGATATTAAGAATTTAGTGGCTCATTTAGACAAAGAACACAAAACGAATCTTGCCAAAATCGTTGATTATTTCCAACCTAACAAACTTATACACGATAAGTTTCCGTGCACTGTGTGTGGTAATGAGTTTAGATACTTCCACACGCTGCTTAAACACTTTAATAAGGAACATACTGGAAACAAGTTCCTTTGCGTGTACTGCGGTAAATCGTACCCGAACAGCTGTATGCTGCAATCTCACGTGAGAATGGTTCATAAACAGCAGAGCATCCGTTATAACTGTGCTTTTTGTGAACAAGGGTTTGTGAGGAATACTGATTTGAATAATCACATGGGCAGTGCACACGGTAAAAAGACCATTAAATGTCCCCAGTGTCCGGAGAAATTTGTCTCTCAATACGCCAAGACATTGCATTTAGTTAAAGCTCACAATGGGGGTCACGCATGTACGTACTGTGACGTAGTTTTTCCAAAACAAAGTCGTTTGACAGAACATGTAAGAAGGTTACATCTTAATGAAAAGACAGTGGAATGTATGATTTGTACGAAAAAATTCTTTGACCAGCGAAGATTGAGAAACCATATGGTGATTCATTTGGATCATAAGGACTCCACCGCTAACGCAGATAAGCGGAGAGAAAACTTGAAAGTACTATTCAATCACACAACCATAGTACCATTCAAGTGGAAGTCCAAGTATGCCTGTTACTACTGCAGCGAAAAGTTTACCGTTTATACCAAGTTTAAAAAGCATACTAAATCCCACGGATCGTGCTGTAAAAAAACTCTAAAACGGCTTAAAACTAATAGCGAGATCAAATTGGACGTATCGGAAATTATATGCGAGCTATGCCAGAAAGAGTTGAAAAGCCTCGACAAAGTTATTGATCATTTGATCATCAGACACTGCAAAGAGTACGATAAAAAAGTCGATATACATTTTCAAGAATACAGACTTAGCGATTTGAAATGCCTGCATTGCGAGCAATCTTTTACACACTTTGCAGTTCTGGCTGGACATGTACACAGTGTTCATTCAAAGAATCGTTTTGAATGTGATGCTTGCGGTTCTGTATTCTTCAAGGAAAAAAACATAGTGCTCCACATAAAGAGGTATCATGACAAGGCTGCAATTATTTGCAAACTGTGTCAGAAAGGATTCGTCAATAAAGCTCGGTTGAAGAGACACTACATCCATAAGCACACCGAGCACGTGAGTCGAGTGGAAAAACATAATGCGAAGGAGTACATTGTTCAGTCCAAGTGCCGCAATTGTTTCAAGGAATTGCCATCAGCAGAGGAAATGAAACTACATAGAACCAATTGCAATGCCCTATCTAACTCGACCGCAAACTCACCGAGTAAAAGAAACAATCACTGTAACCAAATAAGGCGAAACATTCAATGCGTTTTGAACATGTCCACTGCAGTTCCATTTAAGTTCAAATCAAAATTCAGCTGTTTTTATTGTTCCCACTGCTGCACCCAATTCGACGATCTGGTAATACACACCCGAGCGGAACACCCAGTATGTGAGCTGAAATCGAAAGCTTTACGGGCTTGCAAAGGCGAAAAGGCTTGTGTCAAATTAGATATAAACGGTATCGCATGCAAACTTTGTAATCAATCAACATCTGACTTGACTACGTTTGTAGACCACGCCATTACAGAGCACGGAGCGGACTATGATAAGTCTATACCGTTCAAAGATTGCTTTGAAGCATTTCGAATTACTCAGGGGAGAATTTTGTGCCCGGAATGTCAGGAGCCTTTTCCATACTTTGGAACTTTGCTGAGGCATTTGGGCGCTGAACATAACCACCATAAGGCTGTTTGCGCGTACTGTGGCAGAGGTTTCCGGAATACGACCGGTCTAGCCATGCACATACGTAACTCCCACACTGGCATGTGTGAATGTACGATATGTAATGCCAAGTGTAAGAACTCTGACGCTCTTGCGCGCCACATGGCTCGTTACCACGATGCCAAAGAGTTCAAATGTCCTCAGTGCCCTGAGCAATTCGAGACAATGTACAAGAAACAGAATCATCTGATCAAAGCACACAATATTGGGCACAAGTGCGCGTACTGTGggaaaatgttcacaagaaattcgTTTATGATGAACCACATTAGGAGGACGCATCTTAAAGAGCGCACAGTGCCATGTTCGGTCTGTAATTTGAAGTTCTTTGATAGTTATCAGATGGGTATGCATATGGTGAAACATGAGGGTGTACGAAGGTTCAGATGTGATGTCTGTGGTGCAAAAACGAATACAGTGGAGGACAAATATAAGAAAATGGAAATTGCCCGTAAGTTATTAATCAAACGTCGGAATATAGAGTATGTCTTACAGTACAGCAACGTCACACCTTTTATGTGGCACAAGTCTAAATACAGGTGCTTTTACTGTACCGAGCCAATGAGAGACCCTGAGGTCTTAAGGCAGCATACTCGCGAGGCCCATGAACACGCAAACCTCGAGCTCATAGTTTATGACAGAACTAAAAACAACAGAAACAAAGACGCAGCCATAAAGATAGATGTCACTGATATCGGTTGCAAACTGTGCTCGCAAGCAACTAACTCTTTGGAAGAGTTGATACACCATATCATAATAGCACACGACGCTGAGTACGACGTCAGTGTTCCCAACTGTCTTCTCCCCTTTAAACTGGACAAGGATCAGCTCACATGCGCAACATGTAGCGAGAAATTCGTATTCTTCGAGTATCTGCTCAGGCATGCCAATAAACACCATCTCTTCCATCATTACATTTGCGATGTGTGCGGGGTCAGTTTCCAGGGCGAGAATCATTTGAAGATGCATTATAGGTACTATCACAGAGAGGGTGGGTACACTTGTGAATATTGCGGAGTTTCCCTCGCAACGCTATCTAAGAAGCTGTTGCACGAAAAGAACATTCACGAAGTCAATCTTTCTACCTGTCCGCATTGCCCAGAAACTTTTAAAAGTCCGTATCTCAAAAAGCTCCATATGGCGAATATACATGGAGTGGaagaacttaaaataaaatgtcccTACTGTCCCAAAGTTTACCCACAGGAAAGCATTATGTCTCGACATATGAGACGTGTTCATTTGCGAGAGAAGAACGTGGAGTGCGAAGTGTGCGGTGATAAATTCTTCGGACCTTACGACGTGAAACTGCACATGGTTAAACATAACGGTGATAAGAAGTTTGTCTGCAATGTATGCGGAAAGAAATTTTCCAAGAAAAGTAACCTGAATTCTCATGCAATCCTACATACTAGGGAGAAGAATTACAGTTGTAGTATGTGTGATAAAGCCTTCGCTCATCAGAACACGTTGAAGGTCCATATTAGGAATAGACATCAGCAGTTTGACGACGGGTTCAATATTCTGGAAGATATAGTCACCAGTAATATGCCGGACGATTTGGAGCATATGGGAGTTATACAACTTGAAAGTGCAGAAACAATGGCTGATcagtatattgtgaaataa
- Protein Sequence
- MPLYSTLVRNLSKERRRSLEILFNYTTIIPFKYRGKYLCFFCGIDVENREQLIQHSQIHLPCCMDDCSLRNARKLVSVDVSDVGCKVCFEKFENIPDIGFHLVRKHDQPYDGDVMSDFFATYRLIDMKCLACGEVFKYFKNLVHHMNNKHLNMYLECDHCHSKFNRKQDLQMHIRNHHRNEYQCSKCLILFDSHAGLIRHKNKSHISQCNLCFKAFSSLEIRLKHMKNEHNIAAGGTCGFCSKVFNTKYGILDHAAKCTAVDEGKPIEITAETNNDAAAYDVRPVRADLAYIFNNTTVMPFKVSHGKFRCFYCTNEFDKCENLKRHTSVAHPVCDVKFKSMKLKSLTPSKGMKIKIDTSLLQCKMCSVQATDIKNLVAHLDKEHKTNLAKIVDYFQPNKLIHDKFPCTVCGNEFRYFHTLLKHFNKEHTGNKFLCVYCGKSYPNSCMLQSHVRMVHKQQSIRYNCAFCEQGFVRNTDLNNHMGSAHGKKTIKCPQCPEKFVSQYAKTLHLVKAHNGGHACTYCDVVFPKQSRLTEHVRRLHLNEKTVECMICTKKFFDQRRLRNHMVIHLDHKDSTANADKRRENLKVLFNHTTIVPFKWKSKYACYYCSEKFTVYTKFKKHTKSHGSCCKKTLKRLKTNSEIKLDVSEIICELCQKELKSLDKVIDHLIIRHCKEYDKKVDIHFQEYRLSDLKCLHCEQSFTHFAVLAGHVHSVHSKNRFECDACGSVFFKEKNIVLHIKRYHDKAAIICKLCQKGFVNKARLKRHYIHKHTEHVSRVEKHNAKEYIVQSKCRNCFKELPSAEEMKLHRTNCNALSNSTANSPSKRNNHCNQIRRNIQCVLNMSTAVPFKFKSKFSCFYCSHCCTQFDDLVIHTRAEHPVCELKSKALRACKGEKACVKLDINGIACKLCNQSTSDLTTFVDHAITEHGADYDKSIPFKDCFEAFRITQGRILCPECQEPFPYFGTLLRHLGAEHNHHKAVCAYCGRGFRNTTGLAMHIRNSHTGMCECTICNAKCKNSDALARHMARYHDAKEFKCPQCPEQFETMYKKQNHLIKAHNIGHKCAYCGKMFTRNSFMMNHIRRTHLKERTVPCSVCNLKFFDSYQMGMHMVKHEGVRRFRCDVCGAKTNTVEDKYKKMEIARKLLIKRRNIEYVLQYSNVTPFMWHKSKYRCFYCTEPMRDPEVLRQHTREAHEHANLELIVYDRTKNNRNKDAAIKIDVTDIGCKLCSQATNSLEELIHHIIIAHDAEYDVSVPNCLLPFKLDKDQLTCATCSEKFVFFEYLLRHANKHHLFHHYICDVCGVSFQGENHLKMHYRYYHREGGYTCEYCGVSLATLSKKLLHEKNIHEVNLSTCPHCPETFKSPYLKKLHMANIHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCNVCGKKFSKKSNLNSHAILHTREKNYSCSMCDKAFAHQNTLKVHIRNRHQQFDDGFNILEDIVTSNMPDDLEHMGVIQLESAETMADQYIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -