Pdol057205.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- Zfy2
- Assembly
- GCA_963854805.1
- Location
- OY978470.1:13822233-13834785[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0014 0.23 13.7 0.2 5 23 20 39 18 39 0.94 2 21 6 1e+03 2.3 0.6 1 22 48 69 48 71 0.80 3 21 9e-06 0.0015 20.6 0.6 1 23 173 195 173 195 0.98 4 21 1.6e-05 0.0026 19.8 0.1 1 22 201 222 201 222 0.95 5 21 7.8e-06 0.0013 20.8 0.1 1 22 229 250 229 250 0.94 6 21 7.8e-06 0.0013 20.8 0.1 1 22 257 278 257 278 0.94 7 21 7.8e-06 0.0013 20.8 0.1 1 22 285 306 285 306 0.94 8 21 7.8e-06 0.0013 20.8 0.1 1 22 313 334 313 334 0.94 9 21 7.8e-06 0.0013 20.8 0.1 1 22 341 362 341 362 0.94 10 21 7.8e-06 0.0013 20.8 0.1 1 22 369 390 369 390 0.94 11 21 7.8e-06 0.0013 20.8 0.1 1 22 397 418 397 418 0.94 12 21 7.8e-06 0.0013 20.8 0.1 1 22 425 446 425 446 0.94 13 21 7.8e-06 0.0013 20.8 0.1 1 22 453 474 453 474 0.94 14 21 7.8e-06 0.0013 20.8 0.1 1 22 481 502 481 502 0.94 15 21 7.8e-06 0.0013 20.8 0.1 1 22 509 530 509 530 0.94 16 21 7.8e-06 0.0013 20.8 0.1 1 22 537 558 537 558 0.94 17 21 7.8e-06 0.0013 20.8 0.1 1 22 565 586 565 586 0.94 18 21 7.8e-06 0.0013 20.8 0.1 1 22 593 614 593 614 0.94 19 21 7.8e-06 0.0013 20.8 0.1 1 22 621 642 621 642 0.94 20 21 6.1e-07 0.0001 24.3 0.4 1 23 649 671 649 671 0.96 21 21 2.5e-05 0.0042 19.2 0.3 1 23 677 700 677 700 0.97
Sequence Information
- Coding Sequence
- ATGAGTGCCGGAGGCTCACATATTGACAGTTCCTTCAGCTTAAAGTATATTACCTGTGAGTGTGGCAAAACGTTTCCCTCGGAAAATGATTTGAAAACTCATCTTGCAAAAGAGCACCCTCACAAAAGGGAGAGGAAGGAATTCAAGTGTGGTGTTTGTAAGTCAATATTCGAAACCGAGGCAGGGTGCATTGCTCACTATGAACAGGACCATATTACCTGTGAAGATGTTAAGGAGGTATATCTCGATGACTCGGAGGATACAAAGCCTGACGTTAAACCTGATTTGGCCAAATTGGAAGTGGAGGTGAACGCAGATGATGAATACAAGTATCACGTAGAAATTACTAATTGTGATGTAACCGAGGAAGAACTGGTCAAAGAAAAAGTGGTGACTGAGGAGTTGGTGATGGAGTACCAGGAAGAGGGTGATCAGGTGTCACATATACCGAAGGAGTGTGGGCATTCGAGTGCAGCCCTGATGTATCACAAGCGAGTTCACACCGGGGAGAAGCCCTACGCATGCGATTTCTGTCCGAAAAAGTTCACAAGGCCGATCTTCTTGAAGATTCACGTCCGCACCCATACTGGCGAGCGTCCGTATGCATGTCCGCAATGTCCCAAAGCGTTCTACAATAATGCAGGACTCCACAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCACTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTCAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCACTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCACATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGGTAAGTACTAACGAGTGTCCGTATCTATGTCCGCATTGTCCCAAAGCGTTCTACAGTAAAGCAGCCCTGCTCAGGCATATCCGGATACACACCGGAGAAAGACCATATCCGTGCCCGATGTGCAGCAAGACCTTTACCCAGTCCAACGCCATGAAGCTTCATGTATCCACTGTGCATCTTATGAAACCCACTCCTTataagagtaagaaaaaaaaGCTCAAAACGGACGAGAACAAGTAA
- Protein Sequence
- MSAGGSHIDSSFSLKYITCECGKTFPSENDLKTHLAKEHPHKRERKEFKCGVCKSIFETEAGCIAHYEQDHITCEDVKEVYLDDSEDTKPDVKPDLAKLEVEVNADDEYKYHVEITNCDVTEEELVKEKVVTEELVMEYQEEGDQVSHIPKECGHSSAALMYHKRVHTGEKPYACDFCPKKFTRPIFLKIHVRTHTGERPYACPQCPKAFYNNAGLHRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRVSTNECPYLCPHCPKAFYSKAALLRHIRIHTGERPYPCPMCSKTFTQSNAMKLHVSTVHLMKPTPYKSKKKKLKTDENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -