Pdol013129.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978445.1:6883552-6889987[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-07 0.00049 21.5 0.0 3 40 17 54 15 57 0.91 2 2 1.8 9.8e+02 1.3 0.0 9 22 150 163 149 164 0.88
Sequence Information
- Coding Sequence
- ATGCGTCGAGGTTATAAGAGAAAAACTGACCGACAGAGCTGGGATCAAACTTCAATGGAGAAAGCTATTGCAGCTGTAAAGAATCATGAAATGGGATGGTTAATGGCTTCTAAACGGTTTGCTGTTCCACAGACTACCCTAAGAAGACACGCTCATGGGCAAAATAAAACCATAGCCCCAAACACAAAAGGAATGGGTAGATATAACTATTTCAGTACTGAAATGGAACAAGAGTTAGTGAATCAAATCAAGCTTGTAGAAATGAGACAGTACGGTATTACTCGCAAGGAAGTTCGAGAATTAGCCTACCAGTTTGCAGAAGCTAAAGAAATACGTAACAATTTTAATAACCACACGAAAATGGCAGATTATCAGTTGATACCAACTGCAAGAGGCAAGTGCCTCCTGATGTGGAAAGGATATACGTACGCCCAAAGAGACCATACCCTAAGATATTACTGTTCTAAGAAGATGTCGGGATGTAAAGCTAAACTGAAATTGGACAACGTTGGGAAAATAATGCGAGCCGAAGGCGAACATTTGCATGAACCTCCCCAATATATTTATGTGAATGGAGAGTAcgttaaaatttaa
- Protein Sequence
- MRRGYKRKTDRQSWDQTSMEKAIAAVKNHEMGWLMASKRFAVPQTTLRRHAHGQNKTIAPNTKGMGRYNYFSTEMEQELVNQIKLVEMRQYGITRKEVRELAYQFAEAKEIRNNFNNHTKMADYQLIPTARGKCLLMWKGYTYAQRDHTLRYYCSKKMSGCKAKLKLDNVGKIMRAEGEHLHEPPQYIYVNGEYVKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -