Pdol019866.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978448.1:16642410-16644287[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 0.00017 23.0 0.1 5 39 19 53 18 57 0.92 2 2 0.8 4.5e+02 2.4 0.0 22 34 438 450 437 454 0.91
Sequence Information
- Coding Sequence
- ATGCCACGAAATTATGTCAGAAAGACGGACCGCCAAAATTGGGATAAAATCTCCATGGAGAAAGCTATTGCTGCTGTACATAATAACGAAATGGGCTGGTTGATGGCTTCAAAAGTCTATGGTGTTCCACAAGCCACACTTAGAAGACATGCACagcaacaaaacaaaactaTAGCTCCAACGGCTAAGGGTATGGGCAGGTTTAGAAGCGTCTTCACCATGGAGATGGAACGAGAGTTGGTTGAGCACATAAAGCTTTTAGAAACGCGACTGTTTGGGTTCACCCGCAAGGAAGTTTTAGAATTGGCCTACCAGTTTGCAGAAGTTAATCAAATACCGCACAATTttaataatcaaacaaaaatggcAGGCCGGGAATGGCTGGCTGGATTTAGACGCCGGAACCCAGACATATCTTTGAGGAAACCTGAAGCTACTTCTGCTGCAAGAGCCCAAGCTTTCAACAAACCGCAAGTAGCTCTTTTTTTCAACACATATCAAGACGTCGTTGAAACCAATAAGATTCTTCCATATAGGTTGTATAACGTTGATGAGTCAGCTCTATCAACTGTTCAAAGACCGCAAAAAGTATTTGCTACCACAGGCCGAAAACAGGTTGGGGCTTTAACTAGTGCTGAAAAAGGGTCTCATGTGACAGTCGTTTGCTGCATGAGTGCAAATGGACATTATGTGCCGCcgtgtttaattttttcaagaAAACTGATGAAACAAGAGTTGATTGATGGAGCGCCAACTGGCACTTTAGGCATTGCTCAAGAATCAGGTTGGATGACAACAACTGTATTTTATAAGTGGTTGGAGCATTTCCAGACTCATGTGAAAGCAAGCCCTGAGGACAAAGTGCTCTTGATTGTGGACGGGCACATAAGTCATAAAGGAATTGAGAGCTTAACATTCGCAAAGGAACATGGCATCATTTTATTGTGCTTGCCACCACATTGTACTCATCGGATGCAGCCTTTAGACGTGTCTTTTTATGGGccattaaaaacatatttcaacCAAGAAGTGACTAGTTGGCTTAAAAATCATCCAGGCAGGGTTGTCACTCACTTTCAAATAGGCCTAATATTTAACAAAGCCTATTGCAGAGCTGCCACAGTCCAGAATGCAGTCAATGGATTTCAGAAAACAGGTCTATGGCCTGTAGATCCACATGTGTTCCCTGATCATTTATTTGAACCGGCTGAAACAACGAACATTCCTGAACAGCATGAATTGGCAGCAGAAAATATGAGTCAATTAGATTGTCCAGTCGTCCTATCAACTCAAGCTGATGAAGACATGCCTGCTGCGGAAATTTGGGACATACCATCAACTTCCCTGGTTAAGGAAATTCCACCCACACCAACAACATATCGTGATTGCACGACTTCAAATTACACTCCAACTACATGCAAATCACAAGAAGTCAATCATTCGATACCTCTTCCTTCCACGATTGTCACTGTTCCAGTCAGTGTGTTATCACCTGTACCGAGAGGAACCTTTGTGGCTGGGCAAGGGAAACGAAAACAGCGCAAAAAGCCAACAGTGCTGCTGCTTACCTCGACACCAAACATGGAAGAAGTAAAATCTAAATCAGCTCCTCCTCCTGTTGCAAAGAAAACTAAGCGAAAGGCtacgaaaattttaaatttcagcaCGAGCAGCGAAGAAGATTTTAGTTCTTTACAAACTTACAGTGCAAACAATGATGACGAGGATTGTGCTTGCATTTATTGTAATGATTTGTATTCCAGGTCCAAGCCAAAGGAAGTTTGGTTAAAATGCATAAAATGTGGCAATTGGGCCCATGCACATTGCGCAGACGTTCCAAAGAAGACAAAGTCCTTTATTTGCGAGCTGTGCAAGTAA
- Protein Sequence
- MPRNYVRKTDRQNWDKISMEKAIAAVHNNEMGWLMASKVYGVPQATLRRHAQQQNKTIAPTAKGMGRFRSVFTMEMERELVEHIKLLETRLFGFTRKEVLELAYQFAEVNQIPHNFNNQTKMAGREWLAGFRRRNPDISLRKPEATSAARAQAFNKPQVALFFNTYQDVVETNKILPYRLYNVDESALSTVQRPQKVFATTGRKQVGALTSAEKGSHVTVVCCMSANGHYVPPCLIFSRKLMKQELIDGAPTGTLGIAQESGWMTTTVFYKWLEHFQTHVKASPEDKVLLIVDGHISHKGIESLTFAKEHGIILLCLPPHCTHRMQPLDVSFYGPLKTYFNQEVTSWLKNHPGRVVTHFQIGLIFNKAYCRAATVQNAVNGFQKTGLWPVDPHVFPDHLFEPAETTNIPEQHELAAENMSQLDCPVVLSTQADEDMPAAEIWDIPSTSLVKEIPPTPTTYRDCTTSNYTPTTCKSQEVNHSIPLPSTIVTVPVSVLSPVPRGTFVAGQGKRKQRKKPTVLLLTSTPNMEEVKSKSAPPPVAKKTKRKATKILNFSTSSEEDFSSLQTYSANNDDEDCACIYCNDLYSRSKPKEVWLKCIKCGNWAHAHCADVPKKTKSFICELCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -