Pdol018554.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978447.1:30958532-30959347[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 9.4e-06 27.0 0.0 2 40 15 53 14 57 0.92 2 2 3.9 2.2e+03 0.2 0.1 31 39 249 257 248 259 0.86
Sequence Information
- Coding Sequence
- ATGTCTACgaaaaaactcaaaaaaaaaactgtgagtTACACTGCTGAAACTCTACAGAAGGCATTAAAAGAAATTCGCGAAGACCATATCCCAATCAGAGAAGCAGCACGTAAATTTAGTATTCCGAGATGTACAATTCAAGATCGATTAAGTGGCAGAAGAACAGACGAACTAAAAAAACAGGGTCCCGAGCCAGTGCTGGGAGAACAAGGCGAAAAAAAAGTTGTAGATTGGCTTATAAATATAGCGAAATGTGGTTTTCCCGTGAAGAAGCAAGAGCTATTAGATACCGTTcaaaaaattttcaaagattTAAAAAAGCCGAATCCTTTTAAGGATGATCGTCCTGGGCAGACATGGTATCTAAACTTTTTAAAACGACATCCTGAGATATCAGTAAGATCAGCAGAAGGAATCAACAAAGCTCGCGCTAGGGTGACCGAAGAATCGATTCGATTGTGGTTCCGCGAACTGGAAATATTTTTAGCGCAAGAGGGACACTTGGATATACTTACAGAACCCGAAAGGATATTCAATGGAGATGAAAGTGGTTTTTCACTTTGTCCAAAAACAGGAAAAGTTCTTGGGCCAAAAGGTTATCGAAATCTCTACCAAATTAAAGCCGGCAACGAAAAAGATAACCTAACAGTACTCGCAACATTCAACGCTTCTGGTAAGTTTTCCCCGCCATTGGTGGTTTTTCCATATATTAGACCACCAAAAAAGTTTAACAGACAACATGCCACAACACTGGAGTCTAGGAAGAAGCGAATCCGGGTGGATGAATGGAGATGTATTCTTCGAATACATCACTAA
- Protein Sequence
- MSTKKLKKKTVSYTAETLQKALKEIREDHIPIREAARKFSIPRCTIQDRLSGRRTDELKKQGPEPVLGEQGEKKVVDWLINIAKCGFPVKKQELLDTVQKIFKDLKKPNPFKDDRPGQTWYLNFLKRHPEISVRSAEGINKARARVTEESIRLWFRELEIFLAQEGHLDILTEPERIFNGDESGFSLCPKTGKVLGPKGYRNLYQIKAGNEKDNLTVLATFNASGKFSPPLVVFPYIRPPKKFNRQHATTLESRKKRIRVDEWRCILRIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208096;
- 90% Identity
- -
- 80% Identity
- -