Pdol042611.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978460.1:7011533-7013112[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0055 3 9.4 0.0 4 29 105 130 102 132 0.92 2 2 4.4e-07 0.00025 22.5 0.0 4 37 172 206 169 212 0.89
Sequence Information
- Coding Sequence
- atgtcCCGGGACCCGGCAATAAGCGCACTCAGATGGGCTCTGTGCGACGGCAAATCGGGGGGAGGGGCGCCAGTCAAAATCGTCATGGGCCAGGGTACGGCCTTGGCCAACGGCCTTAGTTCGGCCCTGCTCCTTGACCCTGGGCGGCCGGTGTGCAGCCGCCGCGTCACCAGCTGTGTCTACCATACGGCACTCATCTTCCAAAAACTTCTCCAGGTCCCCAAAGGGGGGCAGATAGGTCGCACAATCGCCACCATATTTCTGCTCAAATCGAGCTTTCAAGTCCACAGgaCGCCGACATGGACGGAACTTCAGATGCGGCAAGCCATACAAGCTGTTGTAACACAAGATATGTGTTTCACCGATGCCGCCGCCCAATATGAGGTACCAAGTGGTCGAAATAATCGAGACCGCACTGAACATCCTCTAAGACGTGCTCCAGGCGCTCAGGTAGGGAGTGGATCCCATCCCGCTATTACTAGCGGGGGTGGgaCGCCGACATGGACGGAACTTCAGATGCGGCAAGCCATACAAGCTGTTGTAACACAAGAGATGTGTTTCACCGATGCCGCCGCCCAATATGAGGTACCAAGAGGAACGCTATACCATAATGTTTTGGGCAAAACGAATCGTCTGGCGATTCTGAACATCTTAAACATTTCCGAAGAAGAAGAAAACCGCATCCTCATATTCTGTTGTGATAACAGTATACAGCAATGTTCAAATAGAAAGACTACCAAGAATATTGTAGAAATATTGGAGTTCGTTGAACAATTGCGGCAAAGTGGGGAACCGGGTATCTCATTTGATTCCATGCAGAGTGGGTTCCAATGGTGGTGGGCATTTTCGAAAAAACATTCTATCGTTTATCAgcatagtaataaaacaaagcAAATAGAAAGACTACCAAGATTATTGTAG
- Protein Sequence
- MSRDPAISALRWALCDGKSGGGAPVKIVMGQGTALANGLSSALLLDPGRPVCSRRVTSCVYHTALIFQKLLQVPKGGQIGRTIATIFLLKSSFQVHRTPTWTELQMRQAIQAVVTQDMCFTDAAAQYEVPSGRNNRDRTEHPLRRAPGAQVGSGSHPAITSGGGTPTWTELQMRQAIQAVVTQEMCFTDAAAQYEVPRGTLYHNVLGKTNRLAILNILNISEEEENRILIFCCDNSIQQCSNRKTTKNIVEILEFVEQLRQSGEPGISFDSMQSGFQWWWAFSKKHSIVYQHSNKTKQIERLPRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -