Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.8e-09 1e-06 30.1 0.0 4 39 28 64 25 68 0.89

2 4 9.2e-11 5.1e-08 34.2 0.3 2 39 80 117 79 120 0.92

3 4 1.3e-15 7.4e-13 49.7 0.2 2 45 135 179 134 179 0.96

4 4 3.9e-17 2.2e-14 54.6 0.0 1 41 186 227 186 230 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.8e-09	1e-06	30.1	0.0	4	39	28	64	25	68	0.89
2	4	9.2e-11	5.1e-08	34.2	0.3	2	39	80	117	79	120	0.92
3	4	1.3e-15	7.4e-13	49.7	0.2	2	45	135	179	134	179	0.96
4	4	3.9e-17	2.2e-14	54.6	0.0	1	41	186	227	186	230	0.94

Coding Sequence: ATGAGCAGTGACGAGGCATGTGAGATGAGGGGTGACAGCGAGGCAATACCACGTGGGAGTCCGAAGAGCTGGACTCAGCGTGATATGGATAATGCACTCGACGCGCTCAAAAATCATCATATGAGCCTCACCAAGGCATCGGCCACGTACGGCATACCGTCAACGACGTTGTGGCAGCGCGCGCACCGACTCGGCATCGACACGCCCAAGAAGGAGGGCAGCGCCAAGTCTTGGTCGGAGGCCGACCTGCGAGGCGCCCTGCACGCGCTGAGGGCCGGCGCTATTTCTGCCAACAAGGCTAGCAAGGCGTACGGGATCCCGAGCAGCACCCTGTACAAGATAGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGGGACCTGGCGCGCGCGCTCGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCAGCGATCCAGTACGGGATACCCACCGGGACTCTATACGGCCGGTGCAAACGTGAGGGTATCGAGCTGTCACGATCAAATCCTACGCCATGGTCTGAAGACGCAATGGGAGAGGCTTTAGAAGCAGTCAGAGTGGGTCAGATGTCAATAAATCAAGCAGCCATTCATTTCAATTTACCTTACTCATCCCTTTATGGACGATTCAAGAGATGTAAATATCTGACACagGCCCAGCAAATCCCACAGCAAGAAATCGCTAAAACATCTGAAATGACCAACCAACATCCATCACAAGATCTACCATACTACCACCAGATACCTCAGATGCATACGGAGCAAGATAACATATTAATGAATCAAAACCAGTACACACAGCAAGACTACGTTCAAGATACATCGACGCATAACAATATGGTAATTCAAGATCCATATGCCTCTGGACAAGCGATGTACTATAGCCAGAGCTTTAACAGCATCGTTACCAGCTGA
Protein Sequence: MSSDEACEMRGDSEAIPRGSPKSWTQRDMDNALDALKNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAIQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYLTQAQQIPQQEIAKTSEMTNQHPSQDLPYYHQIPQMHTEQDNILMNQNQYTQQDYVQDTSTHNNMVIQDPYASGQAMYYSQSFNSIVTS

Sequence clustering based on sequence similarity using MMseqs2