Basic Information

Insect: Pimpla rufipes
Gene Symbol: Bcl11b_1
Assembly: GCA_963932165.1
Location: OZ010637.1:1499915-1520403[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.1 8.6 7.4 0.2 2 23 162 184 161 184 0.94

2 6 1.7e-07 1.4e-05 25.5 1.7 1 23 495 517 495 517 0.99

3 6 0.0007 0.06 14.1 0.1 2 23 538 560 538 560 0.97

4 6 2.6e-05 0.0022 18.6 4.3 2 23 769 790 768 790 0.97

5 6 2.4e-05 0.002 18.8 2.5 1 23 796 818 796 818 0.99

6 6 3.6e-05 0.0031 18.2 0.6 1 22 826 847 826 847 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.1	8.6	7.4	0.2	2	23	162	184	161	184	0.94
2	6	1.7e-07	1.4e-05	25.5	1.7	1	23	495	517	495	517	0.99
3	6	0.0007	0.06	14.1	0.1	2	23	538	560	538	560	0.97
4	6	2.6e-05	0.0022	18.6	4.3	2	23	769	790	768	790	0.97
5	6	2.4e-05	0.002	18.8	2.5	1	23	796	818	796	818	0.99
6	6	3.6e-05	0.0031	18.2	0.6	1	22	826	847	826	847	0.97

Sequence Information

Coding Sequence: ATGGTGACTGCGAATCGAGCGGAAACGTCGCAGGGTCCGACGTCACCAGACACCGTCCAGTGCGGGGGCTGCCGGGCCTCGTACCCGCTCGGTGAAATCGTACGTTTCATCGAGCACAAGGTGAACCACTGTCGCAACAGTCTGCAGGGTTGCCACAGTCCACCCCCGGCGGCGGCCCACGAGGACTCCGACCCGGAGGACGCGCTCGCCCTGAAGGTCGCCGACCCGGAGAAGCTCAACTCGGTGCCGAGCATCTCGGCGCCGATAAAcaagcgcgcgagccgcgtcgAGAGTCCACCGACGCCCCAGGGCAATCCCACCGACGCCGGAAGTCCCATCGAGCTCAGGGCCAGCGCGAGCTCGACGCCCAAGAGACGGACCGAGGGCACCGAGGAGACGGAAAAGGACGATCTATCCAAGAAACTCAAGACCGAGTCCGTCGACGCCGACACCAATACCGTCAGTTCCGAACCCCGATACCTGCAATGCTCGCAGTGCTCCCGCCGTCTCTCCTCAGCCTGGGAGATGCTCCAGCACGCGCAGTCGGTCCACGGCGCGAGGCTCTACTCCTCGTCATCAGCGAACACGTCGTCAATCACCCCGGCCCCGAGTCCACCAACCCCAACGCCCTCCCACacgcaacaacagcagcagcaacaacagcagcaacagcaacagcaacaaccgCCCCAGCAACACCACCTCAGCCCGCCGAACCACCTGAACCTCAGCGGCAAATCAACCGGAAGTTCCTCAGCGGCGAATTCCTCAGGAGGCGCGACGAACACGAGCGGTAGCAGCGGAAGCCGCCAGCAGCTCCAATCGGCAGCGGCCTCGTTGGTCGGGGACCCCCTCCACAGCTTCATCAGGCTGCCCCAGCACCTGGAGCGCAGTTTCCCCCCGATGTTCAGGCCCGAATTCCTGGCCCTCAATCCCCTGGCCGGCTACCGAGGCCTCCAGGACCTTCAAACGGCGACGAGAAACCTGCAGAACCTCGGGGACCCCTTGCGGGGTATGGACGGCCTCAACCTGGGCGACTCCCTGGTGCGCAGCTCCCTCGACACCCTCAACAACGCGAGGAACCTCGCGAACCTCACGGAACTCTCCCACGGCCGGGGCCTCCCGGGCCAGGGTCATCCGCCCCAACTCgaaacgaacctggatttttatTCGGCGCGCCTAAGGAGCCTCGCTAACCCGTCCTTAGGCGCGGCTCCACCGAATCCCCCCACGAACCCCGCGGCCCTCGTGCCCAGCCAGGTGCCTCAGCAGCCTCAGCAGCACAGTCACCCCGTGCCGCCGCCCAGTCCGGCGTCCACGAACCCCGCAAACCTGGCGCTGGGACATCAGAAGGAAAACTCCCCGCCCTGCTACACCCAGAGCCCCATTGGGCaccacaacaacaacaactccACCGACAGTGAAAAAGCGAGCCCTCCAACGGCTTCAACCCCCATCATCTCCGACTCCGCGGAGACGGTCTACACCTGCGAGGTGTGCGACAAGAAGTTCCGCTTCCAGTCGAACCTCATCGTCCACCGTCGCAGCCACCAGGACAAGGATCGTCAATCCTTCCAGCAGGAGAATACTCAGGACGGTGGGACCCTCGCGCGCTGCGAGATCTGCGACGCTGAGGTCGCGAGCTTCGCCGAGCTGAGGAAGCACATGAGGAAGGAGCATCAGGAGTCCCTCAACGCGGCCGCGAGTCCTCAGGGAAGCGTGGAAACGGTGCCGGACGACGGCTCGAGTTGCGACGAGAACATGGATCTCGATGAGGCGGAGGAGAACGAGCACGAGAAGCGGGGAGGCGGTGGAGGGGACGGTGAGGACGCTGAGGAAAACACTCCGGAGGACCTGAGCACGACTCAGGGCCAGAGCAGCGAGGAGAGCGGAGGCCGGGTGGATCAGAAACCCAGTCTGGTTGGTGACCTCATGGAGAAGTTCGGCCTCAGCGACATCGCTCAGTACAGCGAGGCCTACAGGCAGGCGCTGAGGGAGAATCATCGTGGGAGCTTCCTCAAAACCGACTCCCCGTCGAACCTCACGAGCTCCCTGAACAACAATAAAGAGAAGGACAGCGCGTTGTCCCCAACGAACTTCAATTCCGCCACAGCGCCCAACATATTCTCCGGCCAGGGTTTCCCCAGAGCCTCAGGTCCGGACTTCGGTGGCCTCTGGCTTCCCAGCCCTCAGTACCTCGAGAGCAACGAGCTCCGCAAGATCTCCAAGGCCACGACGTCCAGTCTGACCCTTCAGGGCCTGCCGAGTCCGCTTCTGAAGAAGGAACGAAGCGGCAGGAACGACACCTGCGAGTTCTGCTTCAAGGTCTTCAAGAACTGCTCGAACCTCACGGTTCATCGACGCTCCCACACGGGTGAGAAGCCCTACAAATGCGAGCTCTGCGCCTACGCCTGCGCTCAGAGTTCCAAGCTCACGAGGCACATGAAGACTCACGGCAGGCAGGGCAAAGACACGTACAAGTGCCGCTTCTGTCAGATGCCGTTCTCGGTGCCGAGCACCCTGGAGAAGCACATGAGGAAGTGCGTGGTGGTGCAGCAGGTGCCGAAGATGGGAATGCCGCATCCGGGGAGTCAGGACGAGGACTCGTCGCTCAGCACCAAGGACACTTGA
Protein Sequence: MVTANRAETSQGPTSPDTVQCGGCRASYPLGEIVRFIEHKVNHCRNSLQGCHSPPPAAAHEDSDPEDALALKVADPEKLNSVPSISAPINKRASRVESPPTPQGNPTDAGSPIELRASASSTPKRRTEGTEETEKDDLSKKLKTESVDADTNTVSSEPRYLQCSQCSRRLSSAWEMLQHAQSVHGARLYSSSSANTSSITPAPSPPTPTPSHTQQQQQQQQQQQQQQQPPQQHHLSPPNHLNLSGKSTGSSSAANSSGGATNTSGSSGSRQQLQSAAASLVGDPLHSFIRLPQHLERSFPPMFRPEFLALNPLAGYRGLQDLQTATRNLQNLGDPLRGMDGLNLGDSLVRSSLDTLNNARNLANLTELSHGRGLPGQGHPPQLETNLDFYSARLRSLANPSLGAAPPNPPTNPAALVPSQVPQQPQQHSHPVPPPSPASTNPANLALGHQKENSPPCYTQSPIGHHNNNNSTDSEKASPPTASTPIISDSAETVYTCEVCDKKFRFQSNLIVHRRSHQDKDRQSFQQENTQDGGTLARCEICDAEVASFAELRKHMRKEHQESLNAAASPQGSVETVPDDGSSCDENMDLDEAEENEHEKRGGGGGDGEDAEENTPEDLSTTQGQSSEESGGRVDQKPSLVGDLMEKFGLSDIAQYSEAYRQALRENHRGSFLKTDSPSNLTSSLNNNKEKDSALSPTNFNSATAPNIFSGQGFPRASGPDFGGLWLPSPQYLESNELRKISKATTSSLTLQGLPSPLLKKERSGRNDTCEFCFKVFKNCSNLTVHRRSHTGEKPYKCELCAYACAQSSKLTRHMKTHGRQGKDTYKCRFCQMPFSVPSTLEKHMRKCVVVQQVPKMGMPHPGSQDEDSSLSTKDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01454407;
90% Identity: iTF_00653118;
80% Identity: -