Pruf009144.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- znf423
- Assembly
- GCA_963932165.1
- Location
- OZ010634.1:24242008-24258533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1e-05 0.00089 19.9 1.5 1 23 97 119 97 119 0.98 2 19 0.4 35 5.4 4.0 1 23 125 147 125 147 0.97 3 19 1.3e-06 0.00012 22.7 4.1 1 23 153 175 153 175 0.99 4 19 0.00028 0.024 15.4 0.2 1 23 181 203 181 203 0.99 5 19 0.00073 0.063 14.1 0.4 1 23 365 388 365 388 0.96 6 19 0.22 19 6.3 0.0 2 23 399 421 398 421 0.92 7 19 0.26 22 6.1 0.1 3 23 495 515 494 515 0.97 8 19 0.022 1.9 9.4 0.0 3 23 534 554 533 554 0.96 9 19 0.0042 0.36 11.7 0.5 1 23 563 586 563 586 0.92 10 19 4.6 4e+02 2.1 0.2 1 23 591 614 591 614 0.91 11 19 0.87 74 4.4 2.0 2 23 694 715 693 715 0.96 12 19 0.0074 0.64 10.9 0.1 1 23 720 743 720 744 0.94 13 19 3.7 3.1e+02 2.4 1.6 1 23 811 835 811 835 0.87 14 19 0.00018 0.015 16.0 1.0 2 23 851 873 850 873 0.96 15 19 1.4 1.2e+02 3.7 0.7 1 12 882 893 882 905 0.76 16 19 0.00088 0.076 13.8 0.1 2 23 1115 1137 1114 1137 0.96 17 19 0.051 4.3 8.3 0.4 1 23 1147 1170 1147 1170 0.96 18 19 0.005 0.43 11.5 0.1 2 23 1213 1235 1212 1235 0.94 19 19 1.2 1.1e+02 3.9 3.4 1 23 1242 1265 1242 1265 0.93
Sequence Information
- Coding Sequence
- ATGTTGTTCAAAGGCAACAGCTCGCGGCTGGAGCTGCTGATAGGAAAGATTCAGGCGCACAAGGAATCGCCATCGCCGCCTAGAGACGAAAAGTGCAGTCCCAGAGCCAAAGATGCTCTGGGCACGGGCAGCTCGTCCTGGCACAGCGAGGATGGCGGAACGAACTCCCGACGCGGCGGCGAGACGCCGTCGTCCTGCGCCACCCCGACGTCCGCGAGTTTTCCGTCGGAACCCGAGGTCGACGCCGAGAACGGCGTCAACGCCGAGGCCAACAATCCCGCGGCGCCGTATCCCTGCCAATTCTGCGACAGAACGTTTCCACGACTCAGCTACTTGAAGAAACACGAACAGAGCCACGGCGACCAAATGCCGTATCGTTGCAACTGGTGCGCGCGACTCTTCAAGCACAAGCGCAGCAGGGATCGTCACGTCAAGCTGCACACCGGGGATCGAAGATATCGGTGCTCTCACTGCGAGGCCGCGTTTTCTCGAAGCGATCATCTGAAGATCCACATGAAGACGCACGACAACCAGAAGCCCTATCAGTGCACCGCGTGCTCGCGCGGCTACAACACCGCGGCGGCGCTGACGTCGCACATGCAGTCGCACAAGAAGCACCAGCCGCCCGGGCAGAATACGAAATTGGAGATGGACTACGGGCGTCGCAGCGTCTCCTCGCACAGCACATCCTCGCCGCCGATCGGAAACTCCCCGTCGCCAAGCCTGAATCTCAGCCTACATCCGAAGGCCTCGCTCAAGTCGAGCTACCTCAACGGCAACGCGACGCCGGGCGGCGCGCCGCTCGTAAACTCACCGCTGAAACTCGCGTGCATGTACTGCACGCGGGACTCGTTCACGAGCATGCAGCAACTGCAGATGCACGTTCACGCGATGCACCAGGCGATTCTCAACGGCGAGACCCTCGCGATGACCTCGCCGACGCGAAATCACAcgGACGCGAAGAATTACTCGAAGATTCAGGATCACGAGAAGCCGGAGAAGAATTGCAGAAAGGACTACGAGATTTATCGGCTGGAGGAGCCGGAAAAATCGGCGGAGCGAGCCAAAGGCCAGGACGCCGCGGAGGGTGAATTTAGCTGCGGTCAGTGCACGATGAAGTTCTCGAACGTGAGTCTGCTGCGCGATCATCTGCTGTCGATTCACCGAAACGACGGATTCGCCGCGAATCTGATGATGTGCCCGCTCTGCGGGATTCCCTGCGCCTCCGCGGCCGCCTACGCCGAGCACTATCTGCTCCGACACTGCGAGAATCGTCGCGCGGCCGCGAAGGACCCGACCCGGCGCGACTGGGAGGAGAACGCGAACGGGATCCACGACGACAGCCAGTCGGCGTCGAAAACGTCGCAGGGATTTATAGGTCGAACGGAGGCCTCTAGCCTGGAACCCGCAGACCTGACGAAAAAGCAGCAGCATCCTCACCCACGACCTGGTGACTCGAGTTACTCGGCAGGAACTTTGCTGTGCGGCCAGTGCGGCGCAGCCCTGAAGGACTTCGAGTCCTTCCGCGAGCACCTGGCGCGCCATCTGCAGGCCGACCAGCAGCAGAGCAGCGAGGTCGCGGCGTCTTCGCGAAACCCGTGCCCGAAGTGCGAGGCGACGTTCGCGGAACGCGAGGAGATGTTGGCCCACCTGACGAAGCATTACCTCGGCCAGATGAGCAAGGAATTCGCGTGCGGCGCctgcaaaaaattctatcCTCATCCCGATCTACTGCAGCGACATCTTCTCGACACTCACGCGCATCATCTCTACCGATGCGCCCTCTGTCGTGATACTTTCGACTCTCGAGTCGCGATTCAGGTTCATTTCGCCGTGAAACACAGCCAGGAGTGCCGAATTTATCGATGCAGCGCCTGCGGCGTCGCTAATAACGAAAATTCGCCCGGCGGCGCCGAGggacgaaattattttcgtagCGAAGCCGAAATGGCGAATCACGTTAGAACGGTTCACGCGCCAACTAATGTCGTTGTTGCTGCCGTTGGTGGAGCTGCTGACGTTCCTCGACCCAGAAGTCGAGCTTCAACGCCCGGACCGAATTCCACAGCCGCGAATTCTCGCTGCGTCTTCTGCGGAATCTGCTGCAACTCCGATTTGGAGCTGCAGCTCCACCTCGCGAGCCACTCGAGCAGCCTCTACCGGTGCCCCATCTGCCGCGAGGGTTTTCCTGTCGAGTTTTTGTTGGATAGGCATATTGCGCAGGCTCATCACGCTGCTGGTGAGAGGAGCGACGCTTCCGGGGAGAACGGAAGGACGCACAGGGGACGACTGGGGGAGGAAACGACCCGGCCCCAGAAGCGCGGCAGATCGCCGGCCTCGAGCAACAACAACTCGCTGAACCAGCGCGATAACAACAACAAGAGGCTGAACTACGGCGCGACGAACGGCTCGTCGTTGATGCCGCGCGGTCATCGCTGCGAGCTCTGCGAGCACAGCGAGTTCGCGACGGATTCCGATCTTCAGGCGCACAAAAAATTGGTCCACACGCCGGTGAAACTCCAAGCGAAGTCTTTATCTTCTTTGAGCATGACCTGCGCCTACTGCGGCGAGATCTGCCGCTCGCGAAGCGAGCTCGAGTCCCACACGAGGATTCAGCACGCGTCGAGCGAGCCCGGCGGCCGTCACAAGTGCAACATTTGCGACGAGGTCTGCCCGTCCGGCGGAATTCTCGCCGAGCACAAACTGCAGAAACACTGCAAGATCCAGCTGAGCGACAGTTGCATCGTTTGTCGCGCTACCCTCGCCAACGAGGCGCAATTCGTCGAGCACGTGCAGCGTCACAGCCTCGAGAATTCCGATCCGCAGCAGAGACTCGACGGCGCTCTGCCTCATCTTCCCGCCGGTTGCGTCGTGTGCCGGCAAACGCTCATCAGCGACCTCGAGTGCCGTTTGCACGCCCGACATCACTTGAGGGCGACGAACAGCTCGCAAACTTCGACCTCGAGTCCCAGCCCGATTCAGCACAAGAGCCAACAGCAACCGCAGCAACCGCCGCACAcgCTTCAGCGCTCGGCTCTCAGCTGCTGCCTCTGCCTGCGCGAATTCAGCGCCGACGATTTCGTCAGTCTTCCGTCGAATCCCGCCGGCACCGGCGGTCCGCCTCTGCGGGTCTGCAAAACCTGCTACGTGAGACACTCGCAGGGCCTGCCGATTCTCAACTCGCCTTACGAGCACGTGCGGTCGTCGAAGAGCGAAACCTCCTGGGCGGCCGTCAAGGACCAAGTCGGCTGGGAGAACTCGCGCGATCCTTGGGACAGCGAGAGATGCTTCAAAACCGACGAGAGCGGGAAAACCGCGATCGACGAGAGCACCGACGAGATCAGGTGCGAGGAGTGCGGAATCAAGTTCGAGAATTCCGAGGAAGCCGAGAGTCACAGGAGGAAGGAGCACGAGGCGAATTGCGGAAACTCCAATGTCTACACGTGTATTCAGTGccagATGTCTTTCCCGACTGAAGACAAAATTCAGCAGCACGTGAGGAAGGTGCATCTAGAGTCGCCGAGCAAAGCGTCGATCGAGGCGCTTCGCTGCCACCTCTGTCTCTTCGAAGCCAACAGCCCTCTGCAGCTACAGGGACACTTGATAGAACACACATTCGCCGGATGCGCCGGCCTCACTTGTTACATATGCCAGGCGCTTTTCACCACGCCAATCGCACTGCAGAATCACATGCTACAACAACACGGCCTGGGCGCTCGTCCCTACGACTGCAGCCACTGCAGCCTCAAGTTCTTCTTCCGCATCGAATTGGACCATCACACGGTGATGGTGCATCGACGCACCGAGACGTCTTCGCCTCCCGTGGACGTTGGACAGGAGGCCGCGTCGGAAAAGCGCCCGAAGGCCGcggaaaatcgagcgcgaaTTGAGGAAGACGATCAGCGACATATGGAGAGTGTGACGATTAAGGAGGAAATTCCGAACAGtccggaggacgaggacgTCAACGTGGACGGTCACGTCGATCCGTCGAGCGAGCTCGAGCCGAAGCGCGAGAATTGTCCGATGGTGGACACGAAGAAGGAACCTTTCGCTGTGCCGCGAGCGATCGAAGAGAAAACCGTCACCTGA
- Protein Sequence
- MLFKGNSSRLELLIGKIQAHKESPSPPRDEKCSPRAKDALGTGSSSWHSEDGGTNSRRGGETPSSCATPTSASFPSEPEVDAENGVNAEANNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCNWCARLFKHKRSRDRHVKLHTGDRRYRCSHCEAAFSRSDHLKIHMKTHDNQKPYQCTACSRGYNTAAALTSHMQSHKKHQPPGQNTKLEMDYGRRSVSSHSTSSPPIGNSPSPSLNLSLHPKASLKSSYLNGNATPGGAPLVNSPLKLACMYCTRDSFTSMQQLQMHVHAMHQAILNGETLAMTSPTRNHTDAKNYSKIQDHEKPEKNCRKDYEIYRLEEPEKSAERAKGQDAAEGEFSCGQCTMKFSNVSLLRDHLLSIHRNDGFAANLMMCPLCGIPCASAAAYAEHYLLRHCENRRAAAKDPTRRDWEENANGIHDDSQSASKTSQGFIGRTEASSLEPADLTKKQQHPHPRPGDSSYSAGTLLCGQCGAALKDFESFREHLARHLQADQQQSSEVAASSRNPCPKCEATFAEREEMLAHLTKHYLGQMSKEFACGACKKFYPHPDLLQRHLLDTHAHHLYRCALCRDTFDSRVAIQVHFAVKHSQECRIYRCSACGVANNENSPGGAEGRNYFRSEAEMANHVRTVHAPTNVVVAAVGGAADVPRPRSRASTPGPNSTAANSRCVFCGICCNSDLELQLHLASHSSSLYRCPICREGFPVEFLLDRHIAQAHHAAGERSDASGENGRTHRGRLGEETTRPQKRGRSPASSNNNSLNQRDNNNKRLNYGATNGSSLMPRGHRCELCEHSEFATDSDLQAHKKLVHTPVKLQAKSLSSLSMTCAYCGEICRSRSELESHTRIQHASSEPGGRHKCNICDEVCPSGGILAEHKLQKHCKIQLSDSCIVCRATLANEAQFVEHVQRHSLENSDPQQRLDGALPHLPAGCVVCRQTLISDLECRLHARHHLRATNSSQTSTSSPSPIQHKSQQQPQQPPHTLQRSALSCCLCLREFSADDFVSLPSNPAGTGGPPLRVCKTCYVRHSQGLPILNSPYEHVRSSKSETSWAAVKDQVGWENSRDPWDSERCFKTDESGKTAIDESTDEIRCEECGIKFENSEEAESHRRKEHEANCGNSNVYTCIQCQMSFPTEDKIQQHVRKVHLESPSKASIEALRCHLCLFEANSPLQLQGHLIEHTFAGCAGLTCYICQALFTTPIALQNHMLQQHGLGARPYDCSHCSLKFFFRIELDHHTVMVHRRTETSSPPVDVGQEAASEKRPKAAENRARIEEDDQRHMESVTIKEEIPNSPEDEDVNVDGHVDPSSELEPKRENCPMVDTKKEPFAVPRAIEEKTVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343389;
- 90% Identity
- -
- 80% Identity
- -