Pruf004835.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932165.1
- Location
- OZ010632.1:629586-633049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.8e-05 0.0058 17.3 4.0 1 23 272 294 272 294 0.98 2 11 0.038 3.2 8.7 12.0 1 23 300 322 300 322 0.95 3 11 8.1e-05 0.007 17.1 6.6 1 23 328 350 328 350 0.99 4 11 0.00056 0.048 14.4 1.6 1 23 356 378 356 378 0.95 5 11 1.8e-06 0.00015 22.3 1.9 1 23 384 406 384 406 0.97 6 11 2e-05 0.0017 19.0 0.1 1 23 412 434 412 434 0.97 7 11 0.00011 0.0092 16.7 1.6 1 23 439 461 439 461 0.97 8 11 9.2e-05 0.0079 16.9 0.0 1 23 467 489 467 489 0.96 9 11 0.00017 0.015 16.0 0.1 2 23 501 522 500 522 0.96 10 11 2.8e-05 0.0024 18.5 4.5 3 23 586 606 584 606 0.96 11 11 3.5e-05 0.003 18.2 4.6 1 23 616 638 616 638 0.97
Sequence Information
- Coding Sequence
- ATGTGCACCACGCCGGGTAACGCCGGCGCCGGTTTCGGCTACGCCTGGTCGTTCGGCGGGCCAGCGACGGACGCCAGGGAGAACTCCCAGGTGGATCTCACGACCAACATCAATTACGCGGTTAACAACAATCAGGATCAGGGCTCCTCGCAGAAGATCCAGGTGGACATCAAGCCGGCCAAGGTGGCGATAAGCGCCATACCCAGAAGGCCCATGTTCGCCATGAACGAGAGTTGCCAGCAGACTCCGAGCGCTCACCACGCCAGCCACGCCGCAGCCGGAGGCGGCGCAGGTGGTGCGggcggaggaggcggcggaggtggaggaggtggaggaggcggcggaggagCTCACAATCAAACGCACGGTACGCCTGTGCGAAACAAGAAGCATCACGATGTATTTTCCCTGACCTGCGACAAGGGTGGCTGCAACTGCGACGCAGCGCATCCCACACCCGCGCCCTCGCTATTCTCAAACACTCTGGTTTTTACCACAGCGGACAAGCACGCCATGTCCAAGCACTTCATGACGCCGCTGGGGCCACTTCAGCTCACCGCCGAGGAGTGCAACGAGATACTGATGAAGCGGGCGGCCGCGGCCTCCAACCAGGGTAACGCGAACAACGTCGCGAGCGGCCAGGGCGGCGgtaacagcggcggcggcggcggtggcggcgatgGTAGCGGcggcgccggcggcggcgcgcactTCGGTCACGTTCTCGGGCACGTGAACGCGACGCAGATCGACACGAAGGtgaagcagcagcaggacATGGGCAGCCAGGTTCGCGTGCCCAAGGAACGGCCGTACTCGTGTCCCGAGTGCGGCAAGTCGTTTCTACTGAAGCATCACCTGACGACCCACACGCGGGTTCACACCGGCGAGCGTCCCCACATATGCGTCCACTGCGGCAAGACGTTCGCGCACAAACACTGTCTTCACACGCATCTACTGCTGCACAGCGCCGAGCGTCCCTACCAGTGTCGGGAGTGTAAAAAGTCCTTCACCCTCAAGCATCATCTGGTGACGCACACGCGGGTGCACACGCGCGAGCGTCCCTTCGTGTGTCAGGAGTGCGGGCGGGCTTTCCCGCTCAAGCGTCACCTCGTCACCCATAGCAAATTTCACTCCGGCGAACGGCCGTTCGTTTGCGAGGAGTGCGGCGAGTCCTTCTCCCAGAAGGATCATCTCACGATGCACTCGCGCTTCCACGGTAGCTTGCATCCCTTCGTCTGTCCCGACTGCGGCGCGACATTTCAGCGCAAGTTCGAGCTCGTGAATCACGGCCGGCTTCACGGCCGCGTGCCACACTCGTGCACCGTGTGCGGCAAGGAATTTCTCCAGAAGCGCACCCTACTCGCTCACATGCGTCTTCACACCGGCGAGACGCCGTTCGCGTGCACCGTGTGCGGCGAGGCATTCCCGCGCAAAATCGACCTCGTCGCGCACAGCAAGATTCACAatagcaacagcaacagcgacGAGAAGTCACTCACGTGCAGAGAATGCGGCCTGGACTTTCCGAATCGCGAGGCCCTGACGCTCCACCTGAGGTTACACTCCGGCGACCGGACCCTGGTGACGGATCTCTGCGGTCTAGCGGCGGCCTTCCAGCAGACGCCGGGTCACTTTCTCACGCCAAACGCGACTCATCAGATGAACGGGCCGATCGGGACGCCAGGCGTGAGTCACATGCACGGCGCGACGCAGACGTCGCCGCCCGCGGGTCCCAAGCCGAAGCCGCATCTATGCCCGGACTGCGGCCGCGGCTTCGCCCAGAAGCACGGCCTCCACCAGCACCAGAGACGGCACACGGACGGCAGTTGTCACATAAGATCCCACGTGTGCGACAAGTGCGGCAAGGCCTTCTTCCAGAAGAATCATCTGCTGCTGCACCAGCGTCAGCACATGGACCCGCCGCCGAGTATATTGCGCCAGCAGCAGCGATTGGCGGCGCAGGCCGCCGCTCAGctggcgcagcagcagcagcagggacagcagcagcagcagcaacagcaacaagtACAAGTGCAGCAAGTGCAACAGGTACAAGTGCAGCAagttcagcagcagcagcagcagcagcaggtccaaccgcagcagcagcagcagcagcaaactcAGCAGTCTCAGCAGCAGCAAGCGCAGCAACAATCGCAGCAggctcagcagcagcagcaacaagcgcagcagcagcagcagcaagtcCAGCAGCAGGTCCAGCAGGCCCAGCAAGTCCAGCAAGGCCAGCAGGCCTGCGCGGTCGACACGAAATCCATTCAGCTGCAGGCGATACAGCAACAAGTACAGCAACAAGTGCAGCAGCAagtgcaacagcagcagcagcagcaacagcagcagcagcagcagcagcaagtgcagcagcagcagcaacaacaggcCTGCCCCGTGGATACCAAGTCGATTCAGCTGCAAACGATACAGCAACAGGTTCAGCAACAGGTGCAGCAGCAAgtacaacagcaacagcaacagcagcaacagcagcagcagcagcagcagcaacaggcaTGCGCGGTAGACACAAAAGCAATACAGTTGAACGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGAGFGYAWSFGGPATDARENSQVDLTTNINYAVNNNQDQGSSQKIQVDIKPAKVAISAIPRRPMFAMNESCQQTPSAHHASHAAAGGGAGGAGGGGGGGGGGGGGGGGAHNQTHGTPVRNKKHHDVFSLTCDKGGCNCDAAHPTPAPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQGNANNVASGQGGGNSGGGGGGGDGSGGAGGGAHFGHVLGHVNATQIDTKVKQQQDMGSQVRVPKERPYSCPECGKSFLLKHHLTTHTRVHTGERPHICVHCGKTFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKIDLVAHSKIHNSNSNSDEKSLTCRECGLDFPNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNATHQMNGPIGTPGVSHMHGATQTSPPAGPKPKPHLCPDCGRGFAQKHGLHQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRLAAQAAAQLAQQQQQGQQQQQQQQQVQVQQVQQVQVQQVQQQQQQQQVQPQQQQQQQTQQSQQQQAQQQSQQAQQQQQQAQQQQQQVQQQVQQAQQVQQGQQACAVDTKSIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQVQQQQQQQACPVDTKSIQLQTIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQACAVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131010;
- 90% Identity
- -
- 80% Identity
- -