Pruf018340.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932165.1
- Location
- OZ010642.1:5845851-5850297[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00077 0.066 14.0 0.5 2 23 418 440 417 440 0.95 2 15 0.019 1.6 9.7 0.1 3 23 449 470 447 470 0.92 3 15 0.0017 0.14 13.0 1.2 3 23 485 506 484 506 0.96 4 15 0.00068 0.058 14.2 0.2 1 23 512 534 512 534 0.98 5 15 6.3e-06 0.00054 20.6 2.6 1 23 540 562 540 562 0.96 6 15 0.00035 0.03 15.1 3.2 1 23 571 593 571 593 0.97 7 15 3.6e-06 0.00031 21.3 1.1 1 23 599 621 599 621 0.98 8 15 4.1e-06 0.00035 21.2 1.4 1 23 626 648 626 648 0.96 9 15 0.0046 0.4 11.6 4.5 1 23 655 677 655 677 0.98 10 15 0.029 2.5 9.1 0.2 2 23 697 718 696 718 0.96 11 15 0.00015 0.013 16.3 0.6 2 23 726 748 725 748 0.95 12 15 0.11 9.3 7.2 3.3 3 23 756 776 754 776 0.95 13 15 0.0003 0.025 15.3 2.1 1 23 782 804 782 804 0.98 14 15 3.9e-07 3.4e-05 24.4 1.2 1 23 810 832 810 832 0.97 15 15 1.9e-05 0.0016 19.1 4.2 1 23 838 860 838 860 0.98
Sequence Information
- Coding Sequence
- ATGAAGATAGTTTGCTCAGCACCGACGTGCAAATATTCCTCGGAGGGCGAGGATTCGGCAGGCGTGACGTTCATAAGTTTTCCGAACAATAACACAGCAGCTATTTGGGCGCACAACTGCGGTCGGGACGATTTGATAGACAAACCCGTGAAGGATCTTCACACCGATCATTACATATGCTCCGATCATATAGAGGATCGATTCTTCATCAGCAAGAGAAATCCGATAACGATAGCGCAAGGCGCCGTTCCAACGATCTTTCCAGCGACGAGACATTCCAACGACGAGACGATGCATTCCATGCGAGACAATTGTCAGGCAAAGAGCCTCTTGGACTCTCTGCAGTTGTCGGAATTTATTAACGTCACAGACGTTTGCCACTCTCATACCCTGGTTGAAGATGGATGCACATCCGTTTACCAACTGGCGGAAACGGCAAATGATTCTAGTTTTGCTGATGCCACTGCCAATGGCACAAATAATGGTATAAATGACGTAAGCAGGTTGCAAGGGATGTCTGCAGTCGGATTGGCAAATTTATGCAGAATATGCTCTCTGCCTGCGGCCAGCGGAACGGATATTTTTGCCGACGAGGGCTTGAAAATGGAGCTGAGCGAAAAGATCCTTTTGCACACATCCATAAAGGTCGATCCGGGGGACGCGATGCCGCTGAAAATTTGCTCCGGCTGTTGCGACAAATTGGAGGCCACTCACGCGTTGGTCGCGAATTGCTTGCGGACGGACATGCGACTCAGGAGATTCTTCAATATAATCGGCACAGCGGAATATGATCCGAAATTCGAGAAGCTGGTAGCGGCGTGTTCGATGGAAATGGACAACGAGATGAATTTTAATAACGTTGCGATCAGTAACGACGAATCATCGAAGACGCCGTCGTCGCGAAAATTCAGTTCCAAATGGCGCGAGATAACGTCCGAAGTCTCGCTGGAACAGGTCGAGATATGTCCGAGCTCGGAGCAGCCGAGAAACGACGACAACGCGACTCCTAGTCTAAAGTACGTTGTGCACTCGGATCTGAAGAATTTGCTTCAAGCTCTGACGGAAATCGCGCCGAAAAACGAGGAAAGAAACAACGAATCATCGTCCGAGGGAAATTTGCGGCTGATTTGTCTGAATGGCAACACATCGTTGGAGGCCGAAGAGCCGACGATCTTCAATAGCCGCGTGACGATCTGCGATCCTCAGGAGGCGCATCGAAGTTCTCGAGATGGAAACGACGATTGCAAAGTCGTTTGCCCGGTCTGCCGAGTTTCCTTCGTCGACGCGGATTCTTTCGAGAAACACAAGAATTCGTGTCACGACACTTGGACGCAGCAATTGGCCTGTCGAAGCTGCGACGAATCATTCGCCAACAGACAAGATCTCGACGCGCACGAGTCGTCGATGCACGCGAAGAAGACGAACGTCATCGTGTCGAGCAATCGCAGATTCTGCGGCCACTGTTCGGCCGTCTTCGACACGCGGAAGGAGCTGCAGACTCACATCGCGAAGAGCCACGAGGATCGGCAGCTCTTCAAGTGCGGCTTGTGCGAGAAAACCTACGGGAAATGGTCGAGCCTCGACGTCCACGAGGCGACTCACAGGCTCGACAAGCCCTATCTCTGCGATCTCTGCGGCAAGAGCTTCAAGCATTCCAACAATCTGCGCGGTCACAAGCGGATACACTTGGACGATTCGAAGAAGAAGCGTCACGTCTGCGAGATTTGCGGTAGCGCGTTTAGATCGAGATTTCACCTGCGGGAACACACGAACCAGCACAACGACAACAAGCCCTACACGTGCGAGGACTGCGGCAAAGCGTTCTACAAGCGAATCCAGCTGCGGCAGCATCGCCTGTCCCACGGATCGAACAAGCACGCGTGCCCGGTCTGCGGGATGAGCTTCAATCGTCGCGGCAACATGAAGTCGCACCTCAAGCGGCACAGCAAGAGCGAGGGAATGTACACATGCAGCGTCTGCGAGTACAAATGCAAGTCCATGAGCGAGCTGAAGATGCACCGGAAGCAGCACACCGAGAGCGACATAATCGAGAGCATAAAGCTCAAAACCGCCGACAAGAGCGTCTGGCAGTGCAAGACGTGCGACAAGCTGTTCCCGAAACGCGCGATTCTCGTGAATCACGAGCGAGTGCACAGCGGCGATCGGACGACGGTCGAGTGCGACAAGTGCGGGAAAAAATTGGCGAACAAGAGTTCGCTGAGGTATCACGAGAAGTCGATGCACTCGACGGAGCGGCCGCACCTTTGTCAGCACTGCCACGAGGGTTTCGTCTCGAAGGAGGCGCGACTCGTGCACGAGAGAATTCACACGGGCGAGCGGCCGTACGCGTGCAAAATCTGCGGCATGCAGTACAGATGCTCGAGCAACCTCAGTCAGCACATGAAGATTCACTCGTCGGCGCGGCCGCACGTCTGTCGCTACTGCGGCAAGTCGTTCACGCGGAAAGGCGCGCTCAACGTTCACGAGAGAATTCACACGGGCCTCAAACCCTTCGTTTGCCACATTTGCAGCCGATCTTTCTCGCAGAAGAACGACATGCTCAAGCACACCAAGACGCACGAGACGAAGCCGGCGCAGTGCGAGAAGTCCGACGAGCTGCTCGACGGCGCCGAGGGCGAGACGCTCGGAAAGCACGAGCTGATTTTCCAGGAGCAGAACTTGATTGAAACTTCGCTCACGTCGGAATACGTCGAGGCGACGAAGCCGCCGTCGCCACCAGCCTTGGAATACACGCTCAACATTCACTCGCCGACCATCGAGGAAACTCAGCAATTATCGATTGTGTTGAATCAATGA
- Protein Sequence
- MKIVCSAPTCKYSSEGEDSAGVTFISFPNNNTAAIWAHNCGRDDLIDKPVKDLHTDHYICSDHIEDRFFISKRNPITIAQGAVPTIFPATRHSNDETMHSMRDNCQAKSLLDSLQLSEFINVTDVCHSHTLVEDGCTSVYQLAETANDSSFADATANGTNNGINDVSRLQGMSAVGLANLCRICSLPAASGTDIFADEGLKMELSEKILLHTSIKVDPGDAMPLKICSGCCDKLEATHALVANCLRTDMRLRRFFNIIGTAEYDPKFEKLVAACSMEMDNEMNFNNVAISNDESSKTPSSRKFSSKWREITSEVSLEQVEICPSSEQPRNDDNATPSLKYVVHSDLKNLLQALTEIAPKNEERNNESSSEGNLRLICLNGNTSLEAEEPTIFNSRVTICDPQEAHRSSRDGNDDCKVVCPVCRVSFVDADSFEKHKNSCHDTWTQQLACRSCDESFANRQDLDAHESSMHAKKTNVIVSSNRRFCGHCSAVFDTRKELQTHIAKSHEDRQLFKCGLCEKTYGKWSSLDVHEATHRLDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSKKKRHVCEICGSAFRSRFHLREHTNQHNDNKPYTCEDCGKAFYKRIQLRQHRLSHGSNKHACPVCGMSFNRRGNMKSHLKRHSKSEGMYTCSVCEYKCKSMSELKMHRKQHTESDIIESIKLKTADKSVWQCKTCDKLFPKRAILVNHERVHSGDRTTVECDKCGKKLANKSSLRYHEKSMHSTERPHLCQHCHEGFVSKEARLVHERIHTGERPYACKICGMQYRCSSNLSQHMKIHSSARPHVCRYCGKSFTRKGALNVHERIHTGLKPFVCHICSRSFSQKNDMLKHTKTHETKPAQCEKSDELLDGAEGETLGKHELIFQEQNLIETSLTSEYVEATKPPSPPALEYTLNIHSPTIEETQQLSIVLNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -