Pruf018936.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932165.1
- Location
- OZ010642.1:14191457-14194627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.5e-05 0.0048 17.6 0.9 1 22 56 77 56 77 0.95 2 18 6.2e-06 0.00053 20.6 3.5 2 23 107 128 106 128 0.97 3 18 0.0024 0.21 12.5 0.1 3 23 134 154 133 154 0.98 4 18 2.7e-05 0.0023 18.6 0.5 3 23 162 182 161 182 0.98 5 18 7.2e-06 0.00061 20.4 0.2 3 23 190 210 189 210 0.98 6 18 0.61 52 4.9 5.3 1 23 219 241 219 241 0.97 7 18 1.4 1.2e+02 3.8 4.0 2 23 248 268 247 268 0.95 8 18 0.6 52 4.9 1.3 3 16 276 289 275 289 0.87 9 18 0.02 1.7 9.6 2.0 1 23 384 406 384 406 0.97 10 18 0.0001 0.0086 16.8 0.3 2 23 413 435 413 435 0.96 11 18 5e-05 0.0042 17.8 3.4 1 23 441 463 441 463 0.97 12 18 0.13 11 7.0 0.3 1 23 467 489 467 489 0.96 13 18 3.9e-05 0.0034 18.1 2.7 2 23 496 517 495 517 0.96 14 18 1.4e-05 0.0012 19.5 0.2 1 23 523 545 523 545 0.98 15 18 0.048 4.1 8.4 0.7 1 23 551 573 551 573 0.97 16 18 4.2e-07 3.6e-05 24.3 0.2 2 23 580 601 579 601 0.97 17 18 7e-07 6e-05 23.6 0.6 1 23 607 629 607 629 0.98 18 18 6.9e-08 6e-06 26.7 1.9 1 23 635 657 635 657 0.99
Sequence Information
- Coding Sequence
- ATGGAAGTAAATGCTGACGCGTTTGACGAAAAAGTTTCCAAAGTCATTGATCGTATTATCGAGGCCGAGCCGAGAGCGCAAATCGAATGCTTGCGCGACACCTGCGACGAACACAAAACGGAACAGCGGATTCGTCGGGTgcaagagacaaaaaaatccgtggCTCACAGCTGCCCGTTTTGCGGTGAAAAATTTGCCAAAAACACTTTACTTCTTAGGCACCAGAGGAGGCGATGCAAGGAGTACAAAAAGTTGTATCCCGTTCGGCCGAAGGAATGCGACGACCTCGGCGAGGAAATCTCTCGCTCGGGGCCGGTCGAGTGCGACGTTTGCCACAAGAAATTCAAGAAGAAGAGGTATCTGAGGGTCCACATGCGTCTTCACGGATGTCCGCGAATTTGCGACGTGTGCGGCGCCGCTCTGGCCTCCGAGTGGTGCCTCGAGCAGCACATGCGACGACACAACCGCGACTACTCGGAATTCTGCGAGATCTGCAACAAGGGTTTTTACTACCGAGCGACGTTGAACGTCCACATGACGACTCACACCAAGGAGAAGACTGTGGCTTGCGATATCTGCAAGCGAGCCTTCGCCAACAGAATTTATCTCCGCAGTCACATGCGGATACATTTGGATCCAAAAATGCGAAAGAAATTCAAGTGTGATGTCTGCAATTTCGAGACTTTCTACAGTTACTGCTACAAGGAGCACCGGGAAACGCACACGGGCGAGGGTCGTGTGAAATGCAAGCTCTGCGAAAAACACATTCGTCGACAGTACATGAAGACTCACGTGAAAACGCACACTGGCGAAAAACCGGAGATCTGCGAGTTTTGCGGCAAGGGATTCGTCTCGAGAAAGTGCTTGCCAGCAGAGGAGCAAATTCTCAAAGCAGAGCCGATCGAGCTCACTGAAGTGTACACGAtaggcgaggaggaggagcaggaggaggaggtggtcGAGGAaggcgacgaagaagaagaattcgCCGAAGTGTATCAGACCTTCGAGGCGCACGACGTAGTCACCGAGACATTGGAGTACTCGGTGGACGTTCAAGAGTACAAAATCGACGAGGAACCGACGAGAGAGGAGCAGCCAAAGCTTCCTCGTGTCAAGTTCGAGAGCgcgaaaaaatcgaggaagCAGTACGACTGCGACTTGTGCGGCAAGACAATGAGAAAGAAGCTCCAGTACCTGAAACATCGTCAGAATCACGAGAGGAAGCCGGGCGGACGATGCGGGCAGTGCGATCGCGCGTtcagcgacgacgagaagcTTCGCAAACATATCATCAAAGCGCATCAGGACGACAAACCGTTCCCCTGCATGCTGTGCGGCAAGTGCTTCAAGACCGAGGAATTTCTCAAAACGCACCTCAAGCAACACAACAAACGATTCATTTGCGATATATGCGGCGTCTCGAAAGTCTCCGGTTACGATTTGCGGCTTCACAAGAAGAAACACAATCAGGAGTACGTAACGCACTGCAAAATCTGCAACAAAGGATTCTACACGAATCAGACGCTCGAGCGTCACGTGCTCACTCACACCGGCGAGAAACCCTTCGTTTGTAAGATCTGTAACACTCCCTACGCCAGCGCGGCTTATCTCAATATGCACATGAAATCTCACGGTCAGCGCGAGAAACACAAATGCAACATCTGCGATTTCGAGAGTTACTGGAAGGCCGCGTTGAAGGTGCATCTGAAAATTCACACTGGTGACAATCAGATAACTTGCGAGATTTGCGGAAAATCCGTGTCGAGCAAAACGTATCTGCAGATTCACATGAGAATACACTCGGGGGAGAAGCCGCACGTTTGCGAAGTTTGCGGCAAGGCTTTCAGCGTGAGAAAGTACCTGATCGTTCATCTTAGGACTCACACCGGGGAACGACCTTACGAGTGCAAAATTTGCCAGAAGAGATTCACTCAGCAGGGCTCGTTGAATTCGCACATGAAGTCgcacaacgatgcaaaatga
- Protein Sequence
- MEVNADAFDEKVSKVIDRIIEAEPRAQIECLRDTCDEHKTEQRIRRVQETKKSVAHSCPFCGEKFAKNTLLLRHQRRRCKEYKKLYPVRPKECDDLGEEISRSGPVECDVCHKKFKKKRYLRVHMRLHGCPRICDVCGAALASEWCLEQHMRRHNRDYSEFCEICNKGFYYRATLNVHMTTHTKEKTVACDICKRAFANRIYLRSHMRIHLDPKMRKKFKCDVCNFETFYSYCYKEHRETHTGEGRVKCKLCEKHIRRQYMKTHVKTHTGEKPEICEFCGKGFVSRKCLPAEEQILKAEPIELTEVYTIGEEEEQEEEVVEEGDEEEEFAEVYQTFEAHDVVTETLEYSVDVQEYKIDEEPTREEQPKLPRVKFESAKKSRKQYDCDLCGKTMRKKLQYLKHRQNHERKPGGRCGQCDRAFSDDEKLRKHIIKAHQDDKPFPCMLCGKCFKTEEFLKTHLKQHNKRFICDICGVSKVSGYDLRLHKKKHNQEYVTHCKICNKGFYTNQTLERHVLTHTGEKPFVCKICNTPYASAAYLNMHMKSHGQREKHKCNICDFESYWKAALKVHLKIHTGDNQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKICQKRFTQQGSLNSHMKSHNDAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -