Pruf007317.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932165.1
- Location
- OZ010633.1:16603929-16606529[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3e-05 0.0011 19.6 4.2 1 23 353 375 353 375 0.99 2 15 0.014 1.2 10.1 4.9 1 23 381 404 381 404 0.97 3 15 9.9e-06 0.00085 20.0 1.8 2 23 492 513 491 513 0.97 4 15 4.4e-06 0.00038 21.1 1.6 1 23 519 541 519 541 0.98 5 15 0.0031 0.27 12.1 0.4 1 23 547 569 547 569 0.97 6 15 4.1e-06 0.00035 21.2 1.3 1 23 585 607 585 607 0.98 7 15 7.6e-06 0.00066 20.3 1.2 3 23 615 635 613 635 0.98 8 15 1.3e-05 0.0012 19.5 1.9 1 23 641 663 641 663 0.98 9 15 0.00094 0.08 13.7 0.2 1 23 669 691 669 691 0.99 10 15 7.1e-06 0.00061 20.4 0.3 1 23 697 720 697 720 0.94 11 15 2.1e-05 0.0018 18.9 1.3 1 23 726 748 726 748 0.98 12 15 0.00046 0.04 14.7 4.7 1 23 754 776 754 776 0.98 13 15 8.9e-05 0.0076 17.0 0.4 1 23 782 805 782 805 0.96 14 15 5.6e-06 0.00048 20.7 0.9 1 23 811 833 811 833 0.97 15 15 4.1e-06 0.00035 21.2 4.5 1 23 839 861 839 861 0.99
Sequence Information
- Coding Sequence
- ATGGATACAGCCACAACCATGAGCAGCGATTGGATTCCCTCGAAGGTTTCGTTGGATCGAGAGCTGCCCGTGATGCTCAACGCGCCTTTTGCCTCGGTCAAACAGGAGAATTACTTCATGGGCGAAGTCCGGAGGCAGGGAATCAAGAGATTCTCAGAGGAAAGAGAAAAGACTGTTAATCTCAGTAGCACAAATGATTCTACGGAGGCCAAGACTGATGCGGCAACCAACGGACGTCTGGGTTGTGTATCGCCCATGAGGATAAATCACAGAGCTCAAATAGACGTCATAGACTTGCATCACGAAGAATCTGCAATGTACAATCATCTCTTAATTTACGAGGAGCAGTACTCGAAGTTTGTCGTTCTCAGGGCGCTCGTAAGCAAAGAAGCCAAGGAGGTCGCGGCCGAGCTGGCGGACATCGTGACGACGATCGGCGCACCGCGGATAATTCAGAGCGGAAACGGTCGGGCGTACGCGGAGCAAGTGGTACGCGAGATTCGCCTTCTTCTGCGAGATTTCTGCGTCGTTCACGGCGACGCGGCGAAAAACGCGGACGAGCGTCGCGACTTCGCGAGCTCGGTGAAAACGTGGATGGCGAAGAATCCCGGAAGGCAGTGGCACGACGGTCTGAAGATTCTTCAGGTCTCGGAGAACACGACGGTGAATTCGCGAACCGGCAAAATTCCCAGTCAATTGTTCTTCGGGCGAAACATCTGCGAGGATCTGCGAAGAACGATCGGCGGCAAAGGATCGAAGTCGAACGTCGCCACGGAGGACGCGGTGGCCTCGACGAACCCGAAGGATCGCATCTCGGTCATCAACGATCGAAGCGTAAATCCTCCTGCAGTCCCCGTTGTCGAGATTCGCCAGGCGAACGCTAAAGATTGCGACTCTCGCGACATCGATCGCCGAGAAAATCACGCCGAGAAAACATCAAACGACAAACCCGTGAACTTCGTGAGCGTGAAGAGCGAATGGCCGTCGGCGACGACGGAGAACGAGGCGCCCGTAATCAATTCGGACGAGGCGAACGTCGACAGCGAGACCAACAATTTTCGTTGCAAAATATGCCAGAAGCAGTATGTAAAGCTCGGCCATCTGAGAAACCACATGAAAACGCACACGAGAATCGGCAACTTCGAGTGCACAATTTGCTGCAAGACCTTTCGTCTCTCGAGCCTGTACGACAAGCACATGCAGAGGTTTCACGAGGGCCAGGAGAGAGCCGAGAATCCGGAGACCTGTGATCGGCTGGAGGAAGCGGAGAAGGTCGACGAGAACAGCGAAAACGACACGGAGGGCGGCGCGAGGAAAATTCTCCGGATCGATGGAAAAACCACCACAGAACCGGAGAACCCAAAAAAGTCGCCCACGTCGTTGAAGCTGCGGAAACCCGCGAAGAAACCAAACTCTCTGGCCAGAAGAAAGCTCGACGGTCCCTCGACGAAATTGTCAAGAAACCCCCGTCTGGAGTGCACGTATTGCAAGCAAAAATTCAACTTCCCGAGCGTCCTGAAGAGACACATGCGCTCGCACACGAACGAGCGGCCGTACGTCTGCCAGGTGTGCAACAAGAGTTTCAAGCAGCTCGGACATCTCAGCCAGCACGCGCTCACGCACACCGACTACCGTTCCTTCAACTGCACCGTCTGCTCGATCAAATTCGAGTCCCTCGACGCGCTGAAGCTTCATTCACAGTCGCACGCGGACGCGACGCTCTGTCGCTCCCGCGACAACACTTATCGTCTCTTCGAGTGCGACAGCTGCAAGAAAGTCTTCACCACGAAGAGCGTTCTGGAGCGTCACATATTCACGCACACCCACGAGCGTCAGTTCGGCTGCAAGGTGTGCGGCAAGAGATTCAAGCAGGCTGGCCACGTGAAGTCGCACATGCTCGTGCACACGGGGGAGCGTAAATTCGAGTGCACCGTTTGCTCGAAGCGCTTCAGCCTCTCGAATTCCCTGAAGAAGCACATGTACGTGCATAACGGCGAGAAGCCGTACCAGTGCGACGTCTGTGGCGCGCGATTCCTCGAGAAACGCAATCTCAACGGCCACCTCATGACCCACACGAACGAGCGGCCGTTTTCCTGCAAAATTTGCGGCAAACGTTACACACTCGCGGACACGCTGAGGCGGCACATAAGCGCGGCCCACGAGGACGGCCGGACCTATCAGTGCGAGATATGCGCGAAGATGTTCAAGCAGCTGGCGCATCTGTCGGTGCACAAGAAGGTGCACAACGACGAGCGGCCCTTCCAGTGTCATCTCTGCGAGAAGAATTTTAAACATAAAAACGTACTCAAGTCGCACCTCGCGATTCACGCGAACGTGCGGCCCTTCGAGTGCGACGCGTGCAAGGCGACCTTCGTGCGGAAGACGAATCTTCAGACGCACATCACCTCGGCCCACATGAACGAGCGGCCGTACGTCTGCACGATCTGCAACAAGCGGTTCAAGCAGATCAGCCACCTCAACGGGCACATCGTCGTCCACAGCAACTCGATGCCTTATCAGTGCGACTTCTGCGACCGTCGCTGCAACAGACTCGACAATCTGAAGAAACACATGAGGCTGCACGCGAAAAACAAGGAGTAG
- Protein Sequence
- MDTATTMSSDWIPSKVSLDRELPVMLNAPFASVKQENYFMGEVRRQGIKRFSEEREKTVNLSSTNDSTEAKTDAATNGRLGCVSPMRINHRAQIDVIDLHHEESAMYNHLLIYEEQYSKFVVLRALVSKEAKEVAAELADIVTTIGAPRIIQSGNGRAYAEQVVREIRLLLRDFCVVHGDAAKNADERRDFASSVKTWMAKNPGRQWHDGLKILQVSENTTVNSRTGKIPSQLFFGRNICEDLRRTIGGKGSKSNVATEDAVASTNPKDRISVINDRSVNPPAVPVVEIRQANAKDCDSRDIDRRENHAEKTSNDKPVNFVSVKSEWPSATTENEAPVINSDEANVDSETNNFRCKICQKQYVKLGHLRNHMKTHTRIGNFECTICCKTFRLSSLYDKHMQRFHEGQERAENPETCDRLEEAEKVDENSENDTEGGARKILRIDGKTTTEPENPKKSPTSLKLRKPAKKPNSLARRKLDGPSTKLSRNPRLECTYCKQKFNFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHALTHTDYRSFNCTVCSIKFESLDALKLHSQSHADATLCRSRDNTYRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDACKATFVRKTNLQTHITSAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHAKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -