Pruf018756.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- chn
- Assembly
- GCA_963932165.1
- Location
- OZ010642.1:10441846-10447654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.042 3.6 8.6 1.5 2 23 379 400 378 400 0.97 2 31 2.1e-06 0.00018 22.1 1.3 1 23 410 432 410 432 0.99 3 31 4.2e-06 0.00036 21.1 1.1 1 23 438 461 438 461 0.95 4 31 0.0018 0.16 12.8 2.7 1 23 467 489 467 489 0.98 5 31 0.0041 0.35 11.7 4.6 1 23 495 517 495 517 0.96 6 31 0.0033 0.29 12.0 2.1 1 23 523 545 523 545 0.96 7 31 0.033 2.8 8.9 2.2 1 23 551 573 551 573 0.97 8 31 1.9e-05 0.0016 19.0 1.9 1 23 579 602 579 602 0.96 9 31 0.00032 0.027 15.2 0.2 1 20 670 689 670 691 0.93 10 31 0.00051 0.043 14.6 2.8 1 23 753 776 753 776 0.96 11 31 0.00045 0.039 14.7 2.0 1 23 809 831 809 831 0.98 12 31 2.7e-05 0.0023 18.6 1.6 1 23 837 860 837 860 0.97 13 31 6.8e-06 0.00058 20.5 0.4 1 23 866 888 866 888 0.98 14 31 6.7e-07 5.8e-05 23.6 0.6 1 23 894 916 894 916 0.98 15 31 0.00019 0.016 15.9 0.5 1 23 922 944 922 944 0.98 16 31 2.3e-05 0.0019 18.8 1.7 1 23 950 972 950 972 0.97 17 31 0.00019 0.016 15.9 0.2 2 21 979 998 978 999 0.94 18 31 0.0023 0.2 12.5 0.3 1 22 1074 1095 1074 1095 0.96 19 31 0.00076 0.065 14.0 1.7 1 23 1102 1125 1102 1125 0.92 20 31 0.0022 0.19 12.6 1.3 1 23 1131 1153 1131 1153 0.98 21 31 2.3e-05 0.0019 18.8 2.0 1 23 1159 1181 1159 1181 0.95 22 31 8.1e-05 0.0069 17.1 0.2 1 23 1187 1209 1187 1209 0.98 23 31 1.4e-05 0.0012 19.5 3.2 1 23 1215 1237 1215 1237 0.98 24 31 0.0023 0.2 12.5 2.2 1 23 1243 1266 1243 1266 0.93 25 31 4.2e-06 0.00036 21.1 1.6 1 23 1415 1437 1415 1437 0.99 26 31 0.1 8.6 7.4 8.3 1 23 1443 1466 1443 1466 0.96 27 31 0.0011 0.093 13.5 1.2 1 23 1472 1495 1472 1495 0.96 28 31 3.2e-06 0.00028 21.5 1.3 1 23 1501 1523 1501 1523 0.98 29 31 0.069 5.9 7.9 1.2 1 23 1529 1551 1529 1551 0.93 30 31 1.8e-05 0.0015 19.1 3.7 1 23 1557 1579 1557 1579 0.98 31 31 7.3e-05 0.0062 17.2 2.0 1 23 1585 1608 1585 1608 0.97
Sequence Information
- Coding Sequence
- ATGGAACCCAAAAATATGGAGTGCGAAGATGTCGCCTGGCGACCCGACAAACAGAACGTGTCAACAGCGGAGGAAATCGCCAGTTGGGAGGATATTTGCAGAGTCTGCGCGAATGCCAGGGATCACATGATACCGATATTCGAGAATGAGGGAGCCGAACACAAATTGATCAACAAAATTTGCATGTATCTTCCCATTGAGGTATCCAAGACAGACAGTTTGCCGCTTAAACTGTGTTACCATTGCGCAGCGACACTTTTGGCTTGGCACGACCTTGTTACGGGCTGTTTGGATGCAGAAAAGAAGCTTCTACAGATGCAGACGGAAAGGATCCAACAGAGAGAGTCGAACCGATTCAGGTACTCGCAAATTTCAAGCTCAAACGAAGTCGTGGAAGAAATTGTCACCACGATTGAGGAACCCGTTGACGAGTATCAGTCTGACGCAGCGCTGAAATTAGAGAAACCAAGCGAGGCCGCAGTTAGCCTCGAGATTCCCCTGAGGGAAGCGATTCGATTGACATGCGCGGAAAAATCGGAATCAAACGAGGGAGAAGAAGCGAAGCAATTCGCTCTGGGCGAATTGGTCGACGACCCTGAGCCAGTCGCGACGCAAGGGTCGAATAAGTCGCGTGTAGCTCCAGAAGAAACTGAGCCGAGACCAATTGACGAACAAGAAGCGCCGTGTTCAACGCCGCAAAAACTGGAACGAAGGAACGACAATGTGGAGCGATGCGCTGTTAGCCGAGAGACGACTGAGAGGTCCGGTAGAGTGCAGAAGCCATTTAAACTATTCATTGATGCGCAGAGTTTGTGTCGCGAGGGGAGAAAGATCAAAATCGAAGTTACAGACGGTAAATCCGTCCGGATAGTCGACGAGGACTCGACCCAGGCGCGGAACGCGTTGCGCCCCAGCGTCGAGGAACCCTCGAGGCCGGACTCCCCGGGCCCCGAGGACTTGGGGCTCCACAGCGCGGAGGAGACATTCCCGAGAGCCGCGGAAGTTCGGCGGAAATCGCCGCGCAGTGTGCGAGTCAGAAGCGAAAATTTGTTCGTCGAAAGCCGACAAattttcgcagaaaaatcCGACGATTCCCAGGATCGCGGATCGACGACGGACGAGCCGATGACGGTGAAATGTACGGTCTGCCACCACCAATTCGCGGAGATAAAGGATCTCCAGATTCACGCGAGGGAGCACAACGATCTGCCGGAGTCGCGAAAGATCTATCAGTGCGTCGAGTGCGACAAGAGTTTTCGTCTGAAGGACTCGTTCGTGCGCCACCAGCGAATTCACCGGGACGAGCGGCCGTTCACGTGTCACGTGTGCGGCAAGCAGTTCCGCGACTCTGGCGGCCTCTCGCGACACCTCAAGGACGTTCACGCCAAGCTGAAGAATTTCTCCTGCGACATATGCGGCAACTGCTTCTCCTCGAAGGCGACGCGCGACGATCATCGGCGAACTCACACGGGCGAGCGTCCCTACGTCTGCGAGACCTGCCGCAAGTCCTTCAAATCCAAAGCCTGTCTCTACAGTCACAACAAGCTGCACACCAACGAGTTCCCGCATCCCTGCGCCTACTGCAGCAAGAAATTTCGCCGCAGGCAGGAGATGCTCGTGCACGCGACGACACACACGGGCGAGAAGAATCACAGCTGCGACGTGTGTTTCATGCGATTTCGCGTCAAGACCGAGGTCGCGAGGCACAAGCTCACGCACTCCGAGGAGAAGCCCTTCGTCTGCTCGAAATGCGGCTTGAGATTTCGGCAAAATCGTTATCTCAACAATCACATCAAACTGAGACACGCATCTGGCGACACGAGACTGCGAAGATTCGCGAGCTTCCGCCGAAAACGGACGGACGGAAAGTCCGCGGGAAAGGCAACCGCGGCGAGTGCCGAGAGTGCGAGCCACCACGGGCGACAGAATCCCGAAGTCGCGGCGAGGAAGCGAGTGGCGAGAGGCCCCAAGGAAAATCGCTCGAGTGGAAGCGCGGAAGCGAGCAAACATGCCTGCGAAAAATGCTTGAGGGTGTTCGTGAGACAGGCAAATTTAAAGCGGCACGTTGCAAATTGCGATGGAAAGCGGAAAATCGAAAGATCCGCCGATCCGCTGCAGGCGGCGCGACGAGAGGAGGCGGAAAAAGCGGCCACGGACGAGAACCCGGAAACCACCTGCCTCGCGGAGGCGGCGGAACATGACGAAGCGGACTGGGAGGAGCGCGAAATCTCGTCAAAGAGGCCGACGTACGACAACTACTCCTGTCTGTACTGCGACTTCACGACGAAGCGGAAGAAGCTGCTGAATCAGCACATGAACGAGTTTCACTCGGACGCGTCGGACATGAAGATGGGAATAAGTCAGCGCAGCGTCGACCGGGAGCTCGTGAGACGCGCGAGGATGGAAGCCAACGGTCGCGTCTATTATCACTGCAAGGATTGCGGGAAGAATCTCTTCTCGCCCTACACGTTCACCTGGCACGTGAGAATTCACACGGGCGAGCGGCCCTTCACGTGTCACCTGTGCGGAAAGCAATTTCGCGTGAATCAGGGCCTCGCGCGTCATCTGCGCGAGACTCACGCGGGCATCAAGAAATTCCCGTGCGACCTGTGCGGCCGGATGTTCTCGACGAAGCGAAACGTCGAGGACCACCGGCGAATCCACACGGGCGAGCGCCCGTTCGTCTGCAACGTATGCGGCAAAGCATTCAAGCAGAAGGCCTCGCTCTTCGTTCATAATCGCACGCACTCGGATTTCTTTCCCTTCAAGTGCAGCTACTGCGGCCAGGAGTTTCGCACGCGGCCGCCCCTCGTGATTCACCTGACGAAGCACACGGGCGAGAAGCCGCACACCTGCGACATCTGCGATCGCGCCTTTCGCATCAAATACGAGTTGAAGCGCCATCGGCTCATTCATTTCGACGAGAAACCCTGGCAGTGCGCGGACTGCGGTCTCTCGTTCAGACAGAAGCGGTACCTGGTCAATCACAAGAGGATCAATCGCGGCTGCGCAACGTCGAACTCGGTCGAGACCAGAGCCGACCGCGAGTCACGGGGAACGAAGAGCGCAAACGTTTTGGACGATTCGAGAGGCGACGAGGATTCTCTGTGGCGCGAGGGGAAAATAAAGGTGGAGTCCTCGAGCAAATGGGGCAAACGAACTCCGGAGCAACAGCTCGAATTGTCGCGGTCGCGAGTCGTCAAGGACGCGAGGATTTTCTACAAGTGTCGAGACTGCGAGAAGCTCCTCTCGACGGCGTACAACCTGCTTGTTCACCGAAGGAGCCGCTGCTGCGAGAGGCCGCACGATTGTCACGTCTGCGGCAAGACATTCGGCTCGGTTTCCGTACTGCAGAGACACAATCGAGACGTTCATCTGGGGAGAAAGGACTTTTCCTGCGATATCTGCAATCGCCGTTTCGCTACGAGGATCTCGCGGGACGAGCATCGAAGAACTCACACGGGCGAGAGGCCTCACGTTTGCGAAACGTGTGGCAAGACCTTCGCGCAGAAATCGTCGCTCTACGTTCACCGACTCTTCCACACCTCGGACTTTCCGTATCCGTGCTTGGAGTGCGAAATTCCCTTCAGACGGAAGCAGGATCTCGAGAAACACCGGCTGATACACACGGGCGAGAAGCCTCACGTTTGCGAGGTCTGCACGAAACGATTTCGCACCAGCGGCAGCCTGAGTCGTCATCGACAGACTCACAGCGGCTCGGGGCAGTTCGAATGCGAGAGATGCGGCAAGAAATTCAATCAGAAACGTTATCTCCAGTTTCACGTTAAGAATATTCACGAATTTAAGCGAAACACCGCCGCGACTTCGTCCTCGCTTGCGGCGGAGctgaaaaaatcgtggattCCGAGCGCGGAAAGCTCCGACTTCGCGGACTTTCAGAAAGCCTACGTTAACTTCTTCGGCTCGGCCGAGAGCGAGGGTAGCGCGAAAACCGAACTCCCGGAGTATCCGAATCGTCGGAAGAACGAAAACGACGAAAATCCCCGAGATTCTTCAACTGCATCCGAAAGTAGAGAAAGAAAGGACAATAGTAACAATTTAACTCGAGTCACTCGGAGCGATAACAAGGAATCGACAGATGGCACAAATTCCGCGGTCGACAAGTCCGATGCCCCAAATCGCTccaaaaatctgagaaaaaaaaccaagtcAAAATTGAAGAAGAACGAAGCAGTCCCAGcgtcgaagaagaagaagaagaagcgaaatTCGGAGGGGCCTTACACGTGCGACTTGTGCGGGAAGAAGTTTCGACTGCGGGACAGTCTGAAGAGTCACACGAGGATACACACGGGGGAGAAGCAGTTCACTTGCCACATATGCGGAAAGCAGTACAACCAAACGGGTTGTCTCTACTATCACCTCAAGCACTTTCACGGGGGCGTGAAGAATCATTCGTGCGACATATGCGGCAGATCCTTCGCGATGAAGACGACAATGGATGATCATCGACGCTCGATTCACACCGGCGAGCGTCCGTTCGTGTGCGACTCTTGCGGCAAAACGTTCAAGACCAAATCGTCCCTCTACATTCATAGCCGGATTCACACGGAGTCCTTTCCGCACGCGTGCAAATACTGCGGCAAGCTCTTCAGATGGAGGCAGCAGCTTCTCGGCCACCTGACCATCCACACAGGCGAGAAGAACCACAGCTGCGATGTGTGCGGCAAGGCCTTTGGCGTGAAGAATCATTTAACCAGACACAAACGGACGCACTCGACCGACAAGCCCTACACTTGCCAGCAGTGCGGAATGAGCTTCGGCCAAAATCGCTACCTCACGACCCACCGACGATTGCGGCACAAATCCATCGAGAGTCAAgcaaataaatag
- Protein Sequence
- MEPKNMECEDVAWRPDKQNVSTAEEIASWEDICRVCANARDHMIPIFENEGAEHKLINKICMYLPIEVSKTDSLPLKLCYHCAATLLAWHDLVTGCLDAEKKLLQMQTERIQQRESNRFRYSQISSSNEVVEEIVTTIEEPVDEYQSDAALKLEKPSEAAVSLEIPLREAIRLTCAEKSESNEGEEAKQFALGELVDDPEPVATQGSNKSRVAPEETEPRPIDEQEAPCSTPQKLERRNDNVERCAVSRETTERSGRVQKPFKLFIDAQSLCREGRKIKIEVTDGKSVRIVDEDSTQARNALRPSVEEPSRPDSPGPEDLGLHSAEETFPRAAEVRRKSPRSVRVRSENLFVESRQIFAEKSDDSQDRGSTTDEPMTVKCTVCHHQFAEIKDLQIHAREHNDLPESRKIYQCVECDKSFRLKDSFVRHQRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFSCDICGNCFSSKATRDDHRRTHTGERPYVCETCRKSFKSKACLYSHNKLHTNEFPHPCAYCSKKFRRRQEMLVHATTHTGEKNHSCDVCFMRFRVKTEVARHKLTHSEEKPFVCSKCGLRFRQNRYLNNHIKLRHASGDTRLRRFASFRRKRTDGKSAGKATAASAESASHHGRQNPEVAARKRVARGPKENRSSGSAEASKHACEKCLRVFVRQANLKRHVANCDGKRKIERSADPLQAARREEAEKAATDENPETTCLAEAAEHDEADWEEREISSKRPTYDNYSCLYCDFTTKRKKLLNQHMNEFHSDASDMKMGISQRSVDRELVRRARMEANGRVYYHCKDCGKNLFSPYTFTWHVRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDLCGRMFSTKRNVEDHRRIHTGERPFVCNVCGKAFKQKASLFVHNRTHSDFFPFKCSYCGQEFRTRPPLVIHLTKHTGEKPHTCDICDRAFRIKYELKRHRLIHFDEKPWQCADCGLSFRQKRYLVNHKRINRGCATSNSVETRADRESRGTKSANVLDDSRGDEDSLWREGKIKVESSSKWGKRTPEQQLELSRSRVVKDARIFYKCRDCEKLLSTAYNLLVHRRSRCCERPHDCHVCGKTFGSVSVLQRHNRDVHLGRKDFSCDICNRRFATRISRDEHRRTHTGERPHVCETCGKTFAQKSSLYVHRLFHTSDFPYPCLECEIPFRRKQDLEKHRLIHTGEKPHVCEVCTKRFRTSGSLSRHRQTHSGSGQFECERCGKKFNQKRYLQFHVKNIHEFKRNTAATSSSLAAELKKSWIPSAESSDFADFQKAYVNFFGSAESEGSAKTELPEYPNRRKNENDENPRDSSTASESRERKDNSNNLTRVTRSDNKESTDGTNSAVDKSDAPNRSKNLRKKTKSKLKKNEAVPASKKKKKKRNSEGPYTCDLCGKKFRLRDSLKSHTRIHTGEKQFTCHICGKQYNQTGCLYYHLKHFHGGVKNHSCDICGRSFAMKTTMDDHRRSIHTGERPFVCDSCGKTFKTKSSLYIHSRIHTESFPHACKYCGKLFRWRQQLLGHLTIHTGEKNHSCDVCGKAFGVKNHLTRHKRTHSTDKPYTCQQCGMSFGQNRYLTTHRRLRHKSIESQANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -