Pruf001653.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932165.1
- Location
- OZ010630.1:12435233-12436693[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-09 4.5e-06 26.6 0.0 2 40 16 54 15 57 0.90
Sequence Information
- Coding Sequence
- ATGCCACGTAATCGCCAAAGAACAACCAACAAGGGAAGATGGACGAAAGAAGATTTGGAGAATGCGCGAAAATCGATCGTTGAACGGAAATCGTCGATACGCGAGGCGTCGAAAAAGTTTGGCATTCCATTTGCGACTCTTCAGAGGCGAATGAAAACAGACGTGGAGAGCGTGATATCAGGCCCGGCTATGGGTCGTAAGGCTGTACTAAGTCCAGACCAAGAGAAGGTCATGGTAGAGTCTATAAAACTGTTGGGCAAGCTCTTCTACGGCTTAAATTGTCAGCAAATTCGCTACGTCGCTTACGAATTCGCGGAGCGTCAGAGCATTATCCACAATTTCAACAAGGAGAAGAGATGCGCGGGTCGCGACTGGCTCGACGGTTTTCTCAAGAGAAATCCCACGGTGACAACGAGAAAGCCAGAGCCTCCGATTTCGAGCAATAGTAAGGTCGCGGCATTCAACAAACAGGATATAGGGGCTTTCTTCGATAATCTCGAGACGATAATGAGGAAGCACTACTTCGCGTCTCCGAGGATCTTCGCGGTCGACGAAACAGTGATTACGACGATACAGGAGCTCGGGACTCTCAGTCTCCCGGGAATTCTCGTGGAGAAGGGCCAGAAGAGAACGGGCCCGGGTATATGCGAGGAGCGGGGAAAGAATTTAACGGTGGTATGCGGCATGAACGCCGCAGGGACCTTCGTACCACCGATGTTCATCTTTCCGCGGCAAAGGATTTCTCAGCAACTGCAGCAGGGAGGACCTACCGACGCGATTTATCATTGCACCAAAGACGGCTGCGTCAACTCGAATTTGTTTCTCATCTGGTTGCAGCACTTCAAGACCCACGCGAAACCTACCAAGCAGAATCCCTGTCTGCTGGTTCTCGACAATCACCTCAGTCACATTTCCCTCAAATGCTATGAATTTTGCAACAAGAGCAACATAGTTTTGCTCCCTATACCGCCGCACACGTCGCACAGAATGCAGCCGCTGAACGTGGCTTTCTACGGACCTCTGAAAAAAGCCTTTAGGAAAGAGTGCGAAGTCTTCATGAGGAGCCAGGGCCTTAAGAATATAACGCAGAACGATCTCGCGACAATTTTCAACAAAGCTTACCTGTCGGTGGCGGACGTTCAAAAAGCCGCCTCGGGCTTTCGCGTAGCCGGCATTTGTCCGGTTAATCGGGCTATTTTTACAAACGAGGACTTTGTCTCGTCAAAAACGCTTCTGTCGACCGATGGCAACGCTTCTTCCGCACAGCTTTCTGTGCCCATTACGGCGATCAACCAACCGCCCATGGGCCATTTCCTTTATACTAATTTCTCTGACAATTCCCACGTAAACGTTGATCCTTCGGGGACAAATATGCAGATCTTGTACGGCGAAccgaaaatcgaggaaaacccCTTTAAACCCTTTCCGCATTCCTCCGTCGACGATCCACTCGTCTACTGA
- Protein Sequence
- MPRNRQRTTNKGRWTKEDLENARKSIVERKSSIREASKKFGIPFATLQRRMKTDVESVISGPAMGRKAVLSPDQEKVMVESIKLLGKLFYGLNCQQIRYVAYEFAERQSIIHNFNKEKRCAGRDWLDGFLKRNPTVTTRKPEPPISSNSKVAAFNKQDIGAFFDNLETIMRKHYFASPRIFAVDETVITTIQELGTLSLPGILVEKGQKRTGPGICEERGKNLTVVCGMNAAGTFVPPMFIFPRQRISQQLQQGGPTDAIYHCTKDGCVNSNLFLIWLQHFKTHAKPTKQNPCLLVLDNHLSHISLKCYEFCNKSNIVLLPIPPHTSHRMQPLNVAFYGPLKKAFRKECEVFMRSQGLKNITQNDLATIFNKAYLSVADVQKAASGFRVAGICPVNRAIFTNEDFVSSKTLLSTDGNASSAQLSVPITAINQPPMGHFLYTNFSDNSHVNVDPSGTNMQILYGEPKIEENPFKPFPHSSVDDPLVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459677;
- 90% Identity
- iTF_00652619;
- 80% Identity
- -