Pruf007249.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963932165.1
- Location
- OZ010633.1:16404990-16406217[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.5e-11 8.4e-08 32.1 0.0 2 42 16 55 15 58 0.89 2 3 7.8 8.7e+03 -3.1 0.0 30 38 142 150 142 153 0.84 3 3 7.4 8.3e+03 -3.1 0.1 30 43 171 184 171 185 0.78
Sequence Information
- Coding Sequence
- ATGTATTGGCCGTATCAGCGGCGAGCGGGAGCGGGAATCGACGAACCGGACGTGTTGCGGCAAGCGATGGAGGCCGTGAAGAACGGGATGTCGCTCAGAAAAGCCGCGGCCCTCTTCTCCGTGGGGAAGTCGAGTCTTCATCGTTACATTCATCAGGGAGTTCCGTCTCATCGTGACCGGGTGTACTACTGTCCAGGCTGCGGAACTTCGCATCGGCACAAGAAGAATCTTCTCAGGCATGTGGCCATCGAGTGCGGCAAGGAGCCGGCATTTCGTTGCGGCTACTGCGATCACAGATCCAAACGAAAGGGAAACGTCGTGGCTCATGTGAAGCGACGACATCCGGATGCGAGAGTGATGGGCATCCTGAGCTCTCAAAGGGTGACTTATCCTTGCAAGAACTGCGGCAAGGTGTACAACTACTATTCGAGCTTGGCGAGACATTTGAAGCACGAATGTGGCGTGGAGCCCAAGTTTCATTGCCCCCTCTGCCCTTACAGAACGAAGCACAAGTCGAGTCTGAACACTCATCTGAACGGTAGACACATGAAGATGTTGAACGACTTCTACGTGATGCCGAACGGCAACGGAACGGGCGCGTTGGACAGGCCCGATCCGAAGTTCTTGAATAATTGA
- Protein Sequence
- MYWPYQRRAGAGIDEPDVLRQAMEAVKNGMSLRKAAALFSVGKSSLHRYIHQGVPSHRDRVYYCPGCGTSHRHKKNLLRHVAIECGKEPAFRCGYCDHRSKRKGNVVAHVKRRHPDARVMGILSSQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKMLNDFYVMPNGNGTGALDRPDPKFLNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207684;
- 90% Identity
- iTF_01207684;
- 80% Identity
- iTF_01207684;