Pruf004961.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- lov
- Assembly
- GCA_963932165.1
- Location
- OZ010632.1:2046246-2049214[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-16 5.3e-13 48.8 0.0 1 44 574 617 574 618 0.95
Sequence Information
- Coding Sequence
- atgtCGAGCGCCGCGGACAGTCCCGACGCTACAATGGCTCTGCAATCGCATTACTCGTTGCGATGGAACAATCATCAGACTCACATACTCCAGGCGTTCGAGGCTCTCCTGCACGCGGAAATTCTCGTGGACGTGACCCTCGTCTGCTCGGAAACGAGTCTGAGGGCGCACAAGGTCGTCCTAAGTGCCTGCAGCCCCTTCTTCGAGAGGATATTCGCGGAGCATCCGTGCAAGCACCCGGTGATAGTGCTGAAGGACTTTCCGGGCCGCGAGGTGGCGGCGCTGATAGACTTCATGTACCGAGGGGAGGTGCGAGTGGGCCGCGAGGAGTTGCCGGGGCTGATGCGAGCGGCGGAGAGTCTGCAGGTGCGAGGCCTCGCGTCGTCGGAGCCGCGGCCGGCGAGTCCGCCGGAGACGCCTACGACGGATTTGCTGGGCGAGCCATCGACGCCCGAGGGTGCGCGACAGGGAAGTCCGGTGGACGACGAGAACATGGAGACAACGGCAACGAGGATCGACTCGCGGGGTGGAATAATCCAGAGGGAGCAGCGTCTGCCGCACATGGGCCACCTGAATTTCTCTGTCCGCGATCTCCGAGAGTTGTGCGGCTCGCCGTTGATGCCGAGAAGAAAGCAGGCGAGACCGCGACGACGATCCGGCGAATTGGTGCCCCAGGATCTGTCGAGGCCGCACCCGCCACCCAGTCTGAGTCCCCTGTCTGGACTGAACCTCGCAATGGCGAGTCAGCAGCGTCAGGagtcccagcagcagcagcagcagcagcaacaacagcaacagcaacacacgacgatgacgacgacgacggcgacgacaacaacgacgtcgacgccgaTCGGCAGCAcgcacaacaacaacaacaataacaacaacaacaacaacaacaacacgaCGAGCCACCAAAATCAGCAGCGCGATCGCGAGGACATAGCGGAGAACCTTTCGTTGAAGAGGTCGCGTTCGCCGGGCTCGCCCTCGGATCACCACGGCAGCATTAAAATCGAGCGGGACGCGCCCGGCAGCCCGCGGTGTTCGCCACTCACGGGCACGAGTCTCCATCCCGACGGGAGTCTTCAGGATCTTCCGGGCGGCGGCCTCTCGGCGATGTCGGCGCTCTCGTTAACGCCGCCGCATCAGCACAGCGAGTACCTGACGAGCCTCGGGCAACTTGCCGCCCAGTGGCTGCCGAGTCATCAGAGTCAGTTGCAGCAGAGTCACGGGGCGCATCATCGGGAGGGCAGTCCCCAGCAGCACAGTCGACTTCAGCACAATCCGtatcagcagcaacagcagcagcagcagcagcagcgggagTCCTCGCAGTGCCGGGAGCAGCAGGAACAGCAGAgacagcagcaggagcaggaATCGTCGTTACCACCGATAAGATCCGTCGCGGTGTTTCCCATGGACGGAATGTCGCCCGTAGGCGGCGCTGGCGGTCTCTTTCCCCACGGCGGTGGCCTCGATCGGGGCTCCCTCCTCGCCGATCTTCACGACAGCTTCAAGCCCGAGACGCTTCACGGGCTGTTCGGTGGCGCCGGGCTCGGTCATCATCAGAGCAAAAAGTCGAAGAAGCATCGCAGCGACAGCGTGAGCGGCGTCGCGAGGAGATGGTCCGACCATGGACGCGGTGGGATGCCCATCGGGCGGCCCAAGGGACAGcacagcgcgccgcgcggcgggccTCCGAGATCCTGGACCAACGCCGAGCTCACGATAGCCCTGCAACACGTGTGGAACAAACAGATGACGACTTCGCAGGCCAGCCGTATGTTCGGGATACCTTACAACAGTTTGCTCATGTACGTGAGGGGCAAGTACGGGAAGAGCCTGAAGCTCGAGCAGCTGAGAAGGGACTGCACGGGCGCGACTACCGGCGAGGTGATGAACTCGTTGAACAACAACGTGAAGGCGATCCAGGCGCCGCCGCAGATGAGCCACCCGCTCGCCGGGCTTCCGCATCCCGGTGACGACGGGAATTTCCCGCATCATCCGCTCCTCGGTGGCAATCTCCCGCAGGGATTCTTTCCGGACTACAGCGCGACGTTTCCCGTGCCGGTGAGCATGGTTCACCTACTGCCGCCGAGCGAACAGAAGGCCATCGAGCCGGCGACGAATCCCGGGGGCGCGGGCGGCGGCAGCAACGCCCCCGGTAGCTGTCCACCCGGAAGCGGCGCCGGCGGTTGTCCACCCGGCAGCGGAAGCCCTCAGGGTAGCGACCTGGCGCACGGTAGTCGCACACCCTCGCCCGTCGACAACAGCCATCATCACGAGAGCAGCccgtcgacgacgatgaccCCGCAAGCGCCCCAATCGGCGCCGGCTTTGCTCCAACAGAACGGCTCCGATTGA
- Protein Sequence
- MSSAADSPDATMALQSHYSLRWNNHQTHILQAFEALLHAEILVDVTLVCSETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGREVAALIDFMYRGEVRVGREELPGLMRAAESLQVRGLASSEPRPASPPETPTTDLLGEPSTPEGARQGSPVDDENMETTATRIDSRGGIIQREQRLPHMGHLNFSVRDLRELCGSPLMPRRKQARPRRRSGELVPQDLSRPHPPPSLSPLSGLNLAMASQQRQESQQQQQQQQQQQQQHTTMTTTTATTTTTSTPIGSTHNNNNNNNNNNNNNTTSHQNQQRDREDIAENLSLKRSRSPGSPSDHHGSIKIERDAPGSPRCSPLTGTSLHPDGSLQDLPGGGLSAMSALSLTPPHQHSEYLTSLGQLAAQWLPSHQSQLQQSHGAHHREGSPQQHSRLQHNPYQQQQQQQQQQRESSQCREQQEQQRQQQEQESSLPPIRSVAVFPMDGMSPVGGAGGLFPHGGGLDRGSLLADLHDSFKPETLHGLFGGAGLGHHQSKKSKKHRSDSVSGVARRWSDHGRGGMPIGRPKGQHSAPRGGPPRSWTNAELTIALQHVWNKQMTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVMNSLNNNVKAIQAPPQMSHPLAGLPHPGDDGNFPHHPLLGGNLPQGFFPDYSATFPVPVSMVHLLPPSEQKAIEPATNPGGAGGGSNAPGSCPPGSGAGGCPPGSGSPQGSDLAHGSRTPSPVDNSHHHESSPSTTMTPQAPQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397195;
- 90% Identity
- iTF_01207502;
- 80% Identity
- iTF_01207502;