Prap004609.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990606.1:1306836-1310414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.018 1.4 9.7 1.8 2 23 38 61 37 61 0.87 2 19 0.0096 0.75 10.6 0.2 2 23 89 111 88 111 0.95 3 19 0.087 6.7 7.6 0.6 1 23 133 155 133 155 0.94 4 19 4.6 3.6e+02 2.1 0.5 1 22 159 180 159 182 0.68 5 19 0.16 12 6.7 0.7 3 20 187 204 186 206 0.92 6 19 0.017 1.3 9.8 1.1 1 23 213 236 213 236 0.94 7 19 0.046 3.6 8.4 4.5 1 23 243 266 243 266 0.93 8 19 0.0027 0.21 12.3 4.5 1 23 271 293 271 293 0.98 9 19 2 1.6e+02 3.3 0.2 3 23 345 366 343 366 0.88 10 19 0.036 2.7 8.8 0.3 1 23 389 412 389 412 0.96 11 19 0.18 14 6.6 1.2 2 23 436 457 435 457 0.95 12 19 0.12 9.6 7.1 0.7 1 21 461 481 461 482 0.94 13 19 1.3 1e+02 3.8 0.2 1 23 523 546 523 546 0.91 14 19 0.13 10 7.0 0.1 2 23 572 594 571 594 0.95 15 19 0.0044 0.34 11.6 2.8 2 23 618 639 617 639 0.95 16 19 0.00012 0.0093 16.5 0.0 1 23 643 666 643 666 0.97 17 19 0.088 6.8 7.5 0.8 1 23 670 693 670 693 0.96 18 19 0.11 8.3 7.3 6.6 1 22 732 753 732 755 0.88 19 19 0.0026 0.2 12.3 1.3 1 23 765 788 765 788 0.96
Sequence Information
- Coding Sequence
- ATGTACACTTATGAACGGCCGAGAAATTTTGCAAAATCAGAATCATTGGAATATGCCAAGGAATTGTTGCAATTCTCAACTGCGTATCCGTTTAGACTGCAAGGTTCCTACTTGTGTTGCATCTATTGCGCTAAAGTTTTTAAATTGCCGAGTGAATTGCGAGAGCATATAGATGATTGTCATAAAACAATTGATGTTGTTAATACACTGTCGAACAAGTGTTCTGGGAAGGATATTTTCTATAAAGTCGATTGTACAGATTTGAAATGTCGACTCTGTGGAACCGGATTCAATAAAGTAGACGAAGTCGCTAGACATCTCAAATATGATCACGATCGAAGGATCGATCTAAACAGCGGGAATAGAATACAAGTTTACAAACTAACTGATGGTGAATACAACTGCGCCATTTGTAATAAAAATCTCCATAGCTTCATCAGTCTGTGGAGGCACACGGCGGCGCATTACAACAAGTATACGTGCGATACATGCGGTAATAGATATCTGGCGTTTGGATCGTTGAAATTTCACATTCGCTCCGTACACTCGAAACCCAATTGCAGCAAATGTCACGCTGAATTTGACACCAATGAATTGTTGCTCGAACATAACAAAAACACCAAAGCGTGCTGGCATTTCACTTGTGTGACTTGCGGAGAGAGATTTCGTTCGTTCAAAGAGAAACAGACGCACGCAGAGAAGGTCCATAAGAAGGAGAAGTTGATGTATACGTGCGCGAAATGCGATATAACGTACAAAAATCATCGGCAATTTTATCATCACAGCATTGTGATGCATTCTAATGATTATTTCACATGCTCATTTTGTAGTATGAAGTTTGGCTCGAAACATACAATGCGACAGCATATGGCTACCCACACTGGGCTAAGAAGAGTTAAGGATATTGAGCGGAAAAACCCAAAGAGATTATTCGAAAGATCTGTTAGCCAGAACCCACATCGCAGAAATGCAGTTCTCATTCTAAGACATTCCACCGCTATACCATTTAAGACTAGGTTTAATAGAATCATTTGTTCCTATTGTCATGATGAGTTGGATTCTATGGATAACTTAAGAATACACGTATCTGATAATCATAGTAATGCAGATTTTAATAGCGCGTTTTACAAAGTGGTAGATGATTTGAAAATTGATATAAGTAGATTTAAATGTAATCTATGCTTGGAAAGCTTTGGTGATGTGGAAAGATTTATGAATCACATATCGAGTGTTCACGGTAAAGCTGTGAATTTTGATGTCTCGTTTGGGGTGTTGCCTTTTAAGCAGAACGAGGCCGGCCTCTGGGTTTGCTTTGAGTGTGATAAGTTGTTTCGGGATTTTCCCCAAATCAATTGTCATATACGATCCCATTTGAAGATTTACACCTGCGATAAGTGTAGTGCGACCTTCCTGTCTGAACATGGATTGCGGCAGCATGAAAGAAATTTGAAATGTTATACGTCGTCCTATAAACCACGTTTTGGTAAAGCGATGAAACAGAGAAGCAACACAGAGATCATACTCAAGTGTTCGACTGCGTTGCCCTTCCGAATTTGGGGTCAGAATTTCAATTGTATGTTCTGTCGTGTTCAGGCTGGTAATCCTAACGGATTGAGGGCTCATATGTCATCCAGACATGCTAATTTCGAAATAGGTCTAGTTTTCAATAGGAGATTAAACAATGAGTTCCTGAAAGTAGATATCACTAATTTGCAATGTAAGCTCTGCTTCATGGCCATTGATAATCTTGACGAGTTGTTGGCCCACCTTAAAAACGATCACAAGCAACCTATCAACTTTGATGCGCAACCCGGTGTTCTGCCGTTCAAATTGAACGACGGTTCCAGTTGGCGATGTGTGATTTGCAAGATGCAATTCACAGATTTTCACTCGTTGAAGAAGCATACGTCTGAACATTATCAGAATTTCGTCTGTGACACGTGTGGCGAGGGGTTCGTTACTGATGGCGCGCTCCGGGCCCACAAAAGGATACCACACGACAATAAATACAATTGCAGCCGGTGCATAGCGACTTTTTCCACTTTGGAGGAAAGGCGTGTTCATATGAAAAGCCAGCACACTAGTATGCCCTATATGTGCATGCACTGCAAGGATAAACCGAGATTCGCTACTTGGGAGTTGCGCAAGCGCCACTTTATGGAGATACACAACTTCAAACCTGGGGCTGATGCGTACGAATGCACCACGTGTCATATGACGTTTAAGACTCGGTCCCAAAAGTACCATCATAACGTCAAATCCCACAGGTCCAAGAAGGACACAGACTATGGTTTCCCATGTGGTCATTGTTCGCGGGCCTTTATGTCAAAGCTTTCTTTGGATAAACACATCGCGAAGAAGCATTTTCATCTGTAG
- Protein Sequence
- MYTYERPRNFAKSESLEYAKELLQFSTAYPFRLQGSYLCCIYCAKVFKLPSELREHIDDCHKTIDVVNTLSNKCSGKDIFYKVDCTDLKCRLCGTGFNKVDEVARHLKYDHDRRIDLNSGNRIQVYKLTDGEYNCAICNKNLHSFISLWRHTAAHYNKYTCDTCGNRYLAFGSLKFHIRSVHSKPNCSKCHAEFDTNELLLEHNKNTKACWHFTCVTCGERFRSFKEKQTHAEKVHKKEKLMYTCAKCDITYKNHRQFYHHSIVMHSNDYFTCSFCSMKFGSKHTMRQHMATHTGLRRVKDIERKNPKRLFERSVSQNPHRRNAVLILRHSTAIPFKTRFNRIICSYCHDELDSMDNLRIHVSDNHSNADFNSAFYKVVDDLKIDISRFKCNLCLESFGDVERFMNHISSVHGKAVNFDVSFGVLPFKQNEAGLWVCFECDKLFRDFPQINCHIRSHLKIYTCDKCSATFLSEHGLRQHERNLKCYTSSYKPRFGKAMKQRSNTEIILKCSTALPFRIWGQNFNCMFCRVQAGNPNGLRAHMSSRHANFEIGLVFNRRLNNEFLKVDITNLQCKLCFMAIDNLDELLAHLKNDHKQPINFDAQPGVLPFKLNDGSSWRCVICKMQFTDFHSLKKHTSEHYQNFVCDTCGEGFVTDGALRAHKRIPHDNKYNCSRCIATFSTLEERRVHMKSQHTSMPYMCMHCKDKPRFATWELRKRHFMEIHNFKPGADAYECTTCHMTFKTRSQKYHHNVKSHRSKKDTDYGFPCGHCSRAFMSKLSLDKHIAKKHFHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204358;
- 90% Identity
- iTF_01203576;
- 80% Identity
- -