Basic Information

Insect: Pieris rapae
Gene Symbol: Mtf1
Assembly: GCA_905147795.1
Location: LR990598.1:1676313-1684007[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.7e-05 0.0013 19.3 0.7 1 23 20 44 20 44 0.99

2 7 0.0015 0.11 13.1 0.2 1 23 50 74 50 74 0.97

3 7 8.8e-05 0.0068 17.0 0.6 1 23 80 104 80 104 0.96

4 7 7.8e-07 6.1e-05 23.4 1.5 1 23 109 133 109 133 0.97

5 7 3.5e-06 0.00027 21.4 2.4 1 23 139 163 139 163 0.98

6 7 0.0012 0.092 13.4 0.1 5 23 175 193 169 193 0.87

7 7 5.8 4.5e+02 1.8 0.2 2 15 518 532 517 534 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.7e-05	0.0013	19.3	0.7	1	23	20	44	20	44	0.99
2	7	0.0015	0.11	13.1	0.2	1	23	50	74	50	74	0.97
3	7	8.8e-05	0.0068	17.0	0.6	1	23	80	104	80	104	0.96
4	7	7.8e-07	6.1e-05	23.4	1.5	1	23	109	133	109	133	0.97
5	7	3.5e-06	0.00027	21.4	2.4	1	23	139	163	139	163	0.98
6	7	0.0012	0.092	13.4	0.1	5	23	175	193	169	193	0.87
7	7	5.8	4.5e+02	1.8	0.2	2	15	518	532	517	534	0.87

Sequence Information

Coding Sequence: ATGGAGACTAAAGCATGTATCGATAAATGCAAGGTAAAGGATGATAATAGTGCCAGATATAAATGTGAATATGATGGGTGTGAGAGAACTTATAGTACTGTTGGTAATCTACGAACCCACTTGAAAACACACACAGGCGAGTACAGGTTCACATGTCCAATGCCATCATGTAATAAGGCGTTTCTCACATCCTATAGTCTGAAGATTCACGTGCGAGCCCACACAAAGGCAAAACCATTTGCATGTAATATGGGAAATTGTAATAAGGCATTCAATACTCTATACAGATTGAGAGCTCACCAAAGATTACATAGTGGTGATACATTTAACTGCAAAGCTGAGGGTTGTACGAAGTTTTTTACGACGCTAAGCGATTTGAAGAAACACATACGAACACACACTCAAGAGCGGCCGTACAAATGTGGAACAGAAGGCTGCGGTAAATCATTCACCGCGTCTCATCACTTGAAGGCACATGCGCGTACGCACACGGGCTCGAGGCCGCACGCATGCGCCGCGCCATCTTGCGGAAAACAGTTCGCAACGCCCACTAGTCTAAGAGCCCATGCTGCTAAACATCAGACAGACAGTGAGCCGCAACCAGTTATCGTTAAAGTATCAGAACCTCTTCCGAGTAAACCTCCAGATGGTATGAATTGGGATAGCCTACTCGAATCCTTTGGAAAAATCACCACAGAGTCCAATTCTACTGACGGCAGCCTAGACGATATTAACCCTCTGTCTAACAACGTCGACATAACCGAACTACTTTTCGACAACACTAACGATAACGCTAACTATGACATCACTAATCTTGACCTAATCCCCTTCGACGATAAGATCAAGAAAATCGACTGGAATAAAAATATGGACATCAAACCCAAAGCGATGCAATTAGCCCTAGCCAACGAAGTGGAACTACAGGCACCGTGGATTGACGTCACAGCTTTAGCGGCTTCAATACAAGAAACCCCAGTCAGCATCAAAGAGAAAACACCAGAAAATATATTCACCCTTGCCACTTTTGTACCCACACACATGCAAAGTTACATAGACCTTAATTCAGAAGTTCCTATAGCAAATGTCGAAACTTTCAACCTAGATACGCCTAACATACTAGATGTCAGCGATAAAGTGTTTAATGACAGTGAATTGGTAAAGAACTTCGATCCTCCAAGCGAAATAGATTTTCTTAAACCTGGTCCTTCGATTGACAGATCCCTAAATACGCCACCCCCAAAAGTTCAGCATAATATTGAAATTAATCCTTCCAATTCTGTATTGTTTAATACGGATCTCGCTTTAGAAGACACCCTCCTATTTGACAATGAACCTCCATCCGATATGTATGTGGTAAGGACAGAGAATATATTCGGAAAACAGAAGAGGAATCCTCTAGAACAATTAGCGGCCGATGCGGGCATTTGTTCCTGCGTTGATTGTAAATGCGATCCCAACGGTAATTGTTCAAACGACGTAAAATCGATTAGAAACGATTGCTGCGAAGATAAATGCTCATGCGTGAACTGCAATTGCAATCACGCCGAAATGAAATGCGCAGTTGGATGCGGTAAAGCCACAGATACAAACCACAACACGTTCCTAGATTATCATAAACGACATAATAATTCAAATTTAGAAGAATATGGCGTCTATACGCACGAATGCTACGATGACACACCGGCGAGTGTCGCAGAGAGCTTAAAGAAGTTGACATGTTCTTGTGATACAGATAATAACTCTTGCTGTCAAACTAATGACAAAAGAGATAAAAAATCTTGTTGCGTTACAATTTGTATTAAAAATGTGGAGACATTTAAACGTTTCCTTAATAATGATTTGTTAACTGCTTTGAAGCCACCAAGTTTTAATATGACAACGAGTTAG
Protein Sequence: METKACIDKCKVKDDNSARYKCEYDGCERTYSTVGNLRTHLKTHTGEYRFTCPMPSCNKAFLTSYSLKIHVRAHTKAKPFACNMGNCNKAFNTLYRLRAHQRLHSGDTFNCKAEGCTKFFTTLSDLKKHIRTHTQERPYKCGTEGCGKSFTASHHLKAHARTHTGSRPHACAAPSCGKQFATPTSLRAHAAKHQTDSEPQPVIVKVSEPLPSKPPDGMNWDSLLESFGKITTESNSTDGSLDDINPLSNNVDITELLFDNTNDNANYDITNLDLIPFDDKIKKIDWNKNMDIKPKAMQLALANEVELQAPWIDVTALAASIQETPVSIKEKTPENIFTLATFVPTHMQSYIDLNSEVPIANVETFNLDTPNILDVSDKVFNDSELVKNFDPPSEIDFLKPGPSIDRSLNTPPPKVQHNIEINPSNSVLFNTDLALEDTLLFDNEPPSDMYVVRTENIFGKQKRNPLEQLAADAGICSCVDCKCDPNGNCSNDVKSIRNDCCEDKCSCVNCNCNHAEMKCAVGCGKATDTNHNTFLDYHKRHNNSNLEEYGVYTHECYDDTPASVAESLKKLTCSCDTDNNSCCQTNDKRDKKSCCVTICIKNVETFKRFLNNDLLTALKPPSFNMTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202791;
90% Identity: iTF_01202791;
80% Identity: -