Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990594.1:3839278-3841981[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.083 6.5 7.6 0.0 2 23 66 87 65 87 0.95

2 8 0.12 9.6 7.1 0.1 2 23 184 206 183 206 0.86

3 8 7.8e-05 0.006 17.1 1.7 1 23 218 241 218 241 0.97

4 8 1.5e-05 0.0011 19.4 3.0 2 23 282 303 281 303 0.97

5 8 0.00068 0.053 14.2 5.3 1 23 309 331 309 331 0.97

6 8 8.4e-06 0.00065 20.2 4.4 1 23 337 359 337 359 0.98

7 8 9.9e-06 0.00077 20.0 2.4 1 23 365 387 365 387 0.97

8 8 0.029 2.2 9.1 4.2 1 20 393 412 393 413 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.083	6.5	7.6	0.0	2	23	66	87	65	87	0.95
2	8	0.12	9.6	7.1	0.1	2	23	184	206	183	206	0.86
3	8	7.8e-05	0.006	17.1	1.7	1	23	218	241	218	241	0.97
4	8	1.5e-05	0.0011	19.4	3.0	2	23	282	303	281	303	0.97
5	8	0.00068	0.053	14.2	5.3	1	23	309	331	309	331	0.97
6	8	8.4e-06	0.00065	20.2	4.4	1	23	337	359	337	359	0.98
7	8	9.9e-06	0.00077	20.0	2.4	1	23	365	387	365	387	0.97
8	8	0.029	2.2	9.1	4.2	1	20	393	412	393	413	0.94

Sequence Information

Coding Sequence: ATGAAGATTAGTTTCATACTAGCAGCGGAGAGTTACGCTAACGCGTTTTTATATCCTTTTGCTCAAAATAGCGTTTTCATTAAAATGAGTGCTGACGCAGCCTCAATTCCTTGCCCTGTTTGTTTGCATATCGGTACCTTTAATACGGTTGAAACACTTAAAGAGCGCTTAATATTTGTGTCTACCAATAAAATTGTGTGTCCTGTTTGTCAAGAAGAGGTGAATGGATTAGATAAATTGACTATACATTTATTCAGTCACGTGAATATTACTGCAATTGTACAAGAAGACAAAAGGCAAAGGGACAATAAACAAGGTACTACACAAGAAACTCAAGTACCATCAGCAGAAAATGTAAAAAAATTAAAACAATCTATACCTAAAAATAAATCGTATGCTCCAGCTGCACCTGTGAAGTTTGTTAAAATATACCCAAAATTGCCAGTTGTAGCTTTAAATACGATGCCAGTTATAAACAGCAATGTGACAAATAACTCCTTATTAATAACTGCAATTAAAACGAACTCTCCAATTGAGAAAAATAATAACAAATGTAACATTTGTGGAGTACAATTTATAAATGAAGAAATCTTAAAAATGCATAATAGCATTATACATAACTTAGAGGATAAAACTACTCAACCTACAAAATATAACTGTCATCTTTGTTCCAAATACTTTAAAATGCGAGGGTCGCTTATGGTGCATTTGCGAGTAGCTCATTATGGATTTACACAGAAGCTCGAAAGTGATTTAACGGACACGGGAAATAATAATGTGAAGGAAAAAATTGAAGAAATTGAGAAACCGATGGCCTTTTGTAGAAATGATGGTAAACAGTGGCAATGTGACGTTTGCAACAAATATTTTACAACAAAATATTTTTTGAAGAAACATAAACGGCTTCATACAGGTGAAACCCCCTATGCCTGTTCGCAGTGTAACAAGACGTTTACGTTTCAGCAATCTTATCACAAACATCTCCTTTATCACAATGATGATAAACCACACACCTGCACCTACTGTGGTCGTGCTTTCAAAGAATTGTCGACTTTACATAACCATCAGAGAATACATACAGGCGAAAAACCATTTGCCTGTGAAACTTGTGGAAAGTGTTTCCGTCAGCGAGTATCGTATTTAGTACATAGAAGAATACATACAGGAGCTATGCCCTATAAATGTACCGCATGTGATAAAAGTTTTAGATATAAAGTTTCACAAAGAACACACAAGTGTCCATCACAACCACCAGGAACAGTAATAAGGAAATCCGGCGAATTAGTTGAAAAATTAAAAAAAACTAAACGCTCACCCAATTCGAGTCCCAAGTCGCCGAAAGAATCTATACAATATTCTTACCCAGAAGTGTCTGAAGCTAATGCTGAATTGGTCCGCACAGGGGCTCAATTATCATTAGAGGATATGGAATCTGAAAATTTCAGTATAATATCTGATAATATTGTTGGGAACTCGCACGAAATTAACATGATGAATAATATAGAATCAATTAGTCATAAGAAGCAAGGAAAAAGCAATTCATATAATTCTGAAATCGATGAGCTGATAGATTCAATACCAGTGCAAATTAAAAATATTCCTTCACCCTCTGATATATTAAAAAATCTTTGCCTCACAAATGAAGACGATTACTTAAGTATTCTTGATTAA
Protein Sequence: MKISFILAAESYANAFLYPFAQNSVFIKMSADAASIPCPVCLHIGTFNTVETLKERLIFVSTNKIVCPVCQEEVNGLDKLTIHLFSHVNITAIVQEDKRQRDNKQGTTQETQVPSAENVKKLKQSIPKNKSYAPAAPVKFVKIYPKLPVVALNTMPVINSNVTNNSLLITAIKTNSPIEKNNNKCNICGVQFINEEILKMHNSIIHNLEDKTTQPTKYNCHLCSKYFKMRGSLMVHLRVAHYGFTQKLESDLTDTGNNNVKEKIEEIEKPMAFCRNDGKQWQCDVCNKYFTTKYFLKKHKRLHTGETPYACSQCNKTFTFQQSYHKHLLYHNDDKPHTCTYCGRAFKELSTLHNHQRIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGAMPYKCTACDKSFRYKVSQRTHKCPSQPPGTVIRKSGELVEKLKKTKRSPNSSPKSPKESIQYSYPEVSEANAELVRTGAQLSLEDMESENFSIISDNIVGNSHEINMMNNIESISHKKQGKSNSYNSEIDELIDSIPVQIKNIPSPSDILKNLCLTNEDDYLSILD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202777;
90% Identity: iTF_01202777;
80% Identity: -