Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990600.1:922294-931044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.19 15 6.5 5.9 1 23 218 240 218 240 0.98

2 9 0.008 0.62 10.8 1.4 2 23 260 281 260 281 0.97

3 9 0.02 1.6 9.5 1.4 1 23 289 311 289 311 0.94

4 9 0.0065 0.5 11.1 0.6 1 23 329 352 329 352 0.97

5 9 2.8e-05 0.0021 18.6 3.4 2 23 363 384 362 384 0.97

6 9 0.00011 0.0084 16.7 1.7 1 23 390 412 390 412 0.96

7 9 4.2e-05 0.0033 18.0 2.3 2 23 419 440 419 440 0.97

8 9 3.3e-07 2.5e-05 24.6 1.5 1 23 446 468 446 468 0.98

9 9 0.00061 0.047 14.3 0.0 1 22 474 495 474 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.19	15	6.5	5.9	1	23	218	240	218	240	0.98
2	9	0.008	0.62	10.8	1.4	2	23	260	281	260	281	0.97
3	9	0.02	1.6	9.5	1.4	1	23	289	311	289	311	0.94
4	9	0.0065	0.5	11.1	0.6	1	23	329	352	329	352	0.97
5	9	2.8e-05	0.0021	18.6	3.4	2	23	363	384	362	384	0.97
6	9	0.00011	0.0084	16.7	1.7	1	23	390	412	390	412	0.96
7	9	4.2e-05	0.0033	18.0	2.3	2	23	419	440	419	440	0.97
8	9	3.3e-07	2.5e-05	24.6	1.5	1	23	446	468	446	468	0.98
9	9	0.00061	0.047	14.3	0.0	1	22	474	495	474	495	0.97

Sequence Information

Coding Sequence: ATGGACGATATTTGTCGTCTTTGTTGCTCTAACAAATTTGTAAATAACTACATATTTGACGAAGAAAAGGCGTTGTTTTCAAAAATGTCTATGTATTTGCCAATAAAGGTGGTCAAAAATGATCCTTTACCGAAGAAAATTTGTGACAAATGTAGCTGCAAAGTCAATGATTTCTATCAGTTTTGTAATGAAACAATCGAAGTCGAAAACAGACTCAGAAAAATGCTATCCCTGCAGTTAGCTATAACTGTACCAAATCCTGTAAGAAATACACTAAATTTATGTACTAAAACTACTGGTTATCTAAAAAATGAACAAAGTACTCAGACAGATGAAGAATTTCAGATAAAGGTAAAAACTGAACCACTGCAGTCACCCATAGTCATAAAACAGGAGTCTGATTCAAATGATGACAGTTTCGATCACAATGCCTCAGACAGCGATGATAATCTACTTATAGAGATTAAGAAAAATAAAAATCCAAAAGAAGAAAATGAAAGAAATGGCCATGCTCAATCTGTACAAAAGAAAAACCATGCTATGTTACATGCAGAATTCTTTGATATGAATTTAAAGGACAACATTAATTTAGAAATAGTTAAAGATGAATCTGATGATGGATTTGATAATATGGATTTTGATAAGGAAGTTTATAACTGTTGTATATGTTTTGTTAAGTGTGAGACAAAAAGTGATATGATTCAACATTACAAGAGTCATGTTGATCAAACACAAGATATGAAGCCACCAGCTGCTCCACCATTCCCAGCTGAAGGTAGATGTGAAAGATGTCGGAAAGTAGTGCGAAATCAGAAAGCATGGCGTACACACTGGCAGCGTCATTGGAAACGGGACAGACGACCTTACAGATGTACGCTGTGCGAGAAGTCATTTCAAGGTCATCAGCAAATATTGAAACACGGTCTAATACATAAACAAGACTTTGAAAACCCAAATCAACAACCCAGCAAGCCCGTAAAGAGATTTGTATGTGACCTATGTCCTGAAGGATTCGTTTATATGAGATGTCTCCTGGCGCATCGCAATAGCACACATCCCGAGGCCTCGTCTCGCGAACTGGCTTTGCGGTGTGCGCTTTGCAGTCGGTCCTTTACGCATCTCAACTCGTTGAGGAGGCATCTGAGATCGCACTCGGGCGATCGGAATTACCTTTGCAATGTATGCGGCAAGTCACTCACGTCCAGGGAACATCTGAAGTTCCATATACGGATTCATACGGGATACAAACCCAATGTTTGCAAAACTTGTGGCAAAGGCTTCGTGAAGAAATGCAACCTGACGCTACATGAGAGGGTACACTCAGGTGAAAAACCCTATGTCTGCTCGCACTGTGGAAAAGCATTTTCACAGCGATCCACGCTCGTCATACACGAAAGGTACCACAGCGGCGCTCGGCCGTACAAGTGTGGGGTTTGTGGGCGTGGCTTTGTGGCCAAGGGCCTGCTGTCGATGCACTTGAAGACTTCGTGTGTGGACCTCCCAGCGCCAACTGGAAGAGAAATGCATTCGCCGAAAGTCGAAAGAGTTGATCCTAGGTTGTTGGAGCATTAA
Protein Sequence: MDDICRLCCSNKFVNNYIFDEEKALFSKMSMYLPIKVVKNDPLPKKICDKCSCKVNDFYQFCNETIEVENRLRKMLSLQLAITVPNPVRNTLNLCTKTTGYLKNEQSTQTDEEFQIKVKTEPLQSPIVIKQESDSNDDSFDHNASDSDDNLLIEIKKNKNPKEENERNGHAQSVQKKNHAMLHAEFFDMNLKDNINLEIVKDESDDGFDNMDFDKEVYNCCICFVKCETKSDMIQHYKSHVDQTQDMKPPAAPPFPAEGRCERCRKVVRNQKAWRTHWQRHWKRDRRPYRCTLCEKSFQGHQQILKHGLIHKQDFENPNQQPSKPVKRFVCDLCPEGFVYMRCLLAHRNSTHPEASSRELALRCALCSRSFTHLNSLRRHLRSHSGDRNYLCNVCGKSLTSREHLKFHIRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHSGARPYKCGVCGRGFVAKGLLSMHLKTSCVDLPAPTGREMHSPKVERVDPRLLEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879144;
90% Identity: iTF_01202786;
80% Identity: -