Prap015378.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990587.1:4049538-4056743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0079 0.61 10.8 2.1 1 23 241 263 241 263 0.97 2 12 2.8e-05 0.0022 18.5 2.5 2 23 269 290 268 290 0.96 3 12 4.8 3.7e+02 2.1 0.8 1 23 294 316 294 316 0.85 4 12 6e-05 0.0046 17.5 1.7 1 23 321 344 321 344 0.96 5 12 0.84 65 4.4 0.7 2 23 349 370 348 371 0.92 6 12 0.065 5 8.0 1.7 3 21 389 407 388 412 0.91 7 12 0.0071 0.55 11.0 1.0 3 23 422 442 422 442 0.97 8 12 0.012 0.96 10.2 0.1 2 23 481 503 480 503 0.97 9 12 0.00059 0.045 14.4 2.0 1 23 514 536 514 536 0.97 10 12 0.0023 0.18 12.5 1.1 1 23 542 565 542 565 0.96 11 12 0.00017 0.013 16.1 5.6 1 23 571 593 571 593 0.98 12 12 0.00031 0.024 15.3 4.1 1 23 599 622 599 622 0.98
Sequence Information
- Coding Sequence
- ATGGCAACCATTAAATATTGCAGAATTTGCCTACAAATCAATGTTAAAGTTTTTGTTATGGAATCTAACTCTCTAGAACATTACTATGAAATATTAACTGGAAACAGTGTCAAGAAGCCTGAATTATCAAAATATGCTTGCTTTGAGTGTGCAGCTTTACTGAAAAAGTTTTATATATTTAAACAAAGGGGACTGCAGAGTCAATTCATATTGGAAAATATTCTTAGAAATTCTGGTGAGATTACAGATGATGACATTATTCAGATAGATAGAAAATCTCTACTGTTAGGTTCAAATCTAAGTAAAAGTGATCTTCAATTAAAGTATAGTGATGGAAACTCAACCTATACAGATGATAAAATTGAAAATAATGTATTAATAGATGAGCTGGACTTTGATTGGCCCAGTGATGAAGAATTGCAAAAATTTAAGACTGAAATAGAGATTCCTGTTAAAGATGAACAAAAGCAGGAAGTTCCAATAGCATTAAAGGATAAGACACAAAAAAAGATAAAAATACAAAAACAGAAGGTTAAAAAGAAAATAAATAAAAGAAAAGAGAAGAAAAGTAATCTGGTTAAGAAAAGAACGCCTGCTGCAGTAGATTGTATTGATAATGAAAGTTTTGCAAAACATTTTGCAACTATCCATTTAACGACAGAAGAGCAATTTGAGGAGGTAAGAAAGCGCAAAGAGTCAAAGAACTATAGAAACTCATTTTACAAGTGTGACATTTGTTATAAAGGATTCATACATACAAAAGCCTGGGAAACACACAATAAACAACATCAAGAGGGTAAAGTGCAGTGTGATATATGCAAAATGCGTTTTCGGACTAAGCACAGTTTGCAGGTACACATTCAATTCCACAGCACAAAATACCGCTGCAGAAATTGCCCCTACGTAACACTCGGCAAAAATCACGCCAAATTGCATATCCTTTGGCACAGAGGTCATACATACATTTGTGACCATTGTGGAGAGAAGTTTAGTAATCGTAACGCATACCTAACTCACGTGCGTTTAAAACATCGTTCGGACTGGGTTTGTGGTTTCTGCGCTTCCACTTTTGTGTCGCAACTTGGTCTGATGCAACATAAAAGTTATCACCATGCGAGTCATGATGAAAAAACAGAAATAGATGAGAATCCAGATGCGCCCCACTGTGCCGAATGTAATATGAAGTTCGCGAATACGGAGGCGTTCAAGAAGCATTTCCTCACAGCGAGAAAACACGAAGAAACTGCACAGACAATTATCGGTTGTCGGGAATGTGGCGAGACATTTGCGAGTAAGGAAGAACGTCGCCAACACGCCCATATTCATCAATCGCGGTACGCCGGCGGCTATCGGCCGAGTGCGCCGCCCGCGCCTACCCGTTACCCACGATTGAAGACTGACGACCCGGAACCTGATAACGGGCCTACGGTCTGGCCTAATAAGTGTCCTCTGTGTTCCGAGATGATAGCGAGTGCCCGCAGTTTGTCGGCTCATTTTCGCACGGCGCATCCACACGACGAATACGTCAAGGAGAAGCCGCATGTGTGTCACGTTTGCGGGTCGCGGCTACAGACTAAATACAGCCTCGAGGCACACATGTTGAGCCATCTTAAAGAAAAGCCGTTCAAATGCAGTCAATGCGGGCGCGGATTCAACAGTGCGGGATGTCGTGCTAGTCACGAGAACACCGTGCACTCGGATTTGCGACCGCACCAATGTTCCCTCTGCCATAGAGCTTTTAAGAAGAAGGCTACGTTGAAGGCACATTTTATGACGCACACTGGCGAGAAACCCTACCGGTGTGAGATCTGTGGTCACGCGTTCACTCAATCCAACAGCTGCAAGAGCCACATAAGGAAAGTGCATGGAGAACAACCGCCCCGAATACTTACTAGGACAAGGCATACATATTAA
- Protein Sequence
- MATIKYCRICLQINVKVFVMESNSLEHYYEILTGNSVKKPELSKYACFECAALLKKFYIFKQRGLQSQFILENILRNSGEITDDDIIQIDRKSLLLGSNLSKSDLQLKYSDGNSTYTDDKIENNVLIDELDFDWPSDEELQKFKTEIEIPVKDEQKQEVPIALKDKTQKKIKIQKQKVKKKINKRKEKKSNLVKKRTPAAVDCIDNESFAKHFATIHLTTEEQFEEVRKRKESKNYRNSFYKCDICYKGFIHTKAWETHNKQHQEGKVQCDICKMRFRTKHSLQVHIQFHSTKYRCRNCPYVTLGKNHAKLHILWHRGHTYICDHCGEKFSNRNAYLTHVRLKHRSDWVCGFCASTFVSQLGLMQHKSYHHASHDEKTEIDENPDAPHCAECNMKFANTEAFKKHFLTARKHEETAQTIIGCRECGETFASKEERRQHAHIHQSRYAGGYRPSAPPAPTRYPRLKTDDPEPDNGPTVWPNKCPLCSEMIASARSLSAHFRTAHPHDEYVKEKPHVCHVCGSRLQTKYSLEAHMLSHLKEKPFKCSQCGRGFNSAGCRASHENTVHSDLRPHQCSLCHRAFKKKATLKAHFMTHTGEKPYRCEICGHAFTQSNSCKSHIRKVHGEQPPRILTRTRHTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205210;
- 90% Identity
- iTF_01204369;
- 80% Identity
- -