Prap004457.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990606.1:1313977-1325311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.47 36 5.3 0.2 3 23 237 258 235 259 0.92 2 16 0.033 2.6 8.9 0.2 2 23 284 306 283 306 0.93 3 16 0.0061 0.47 11.2 1.1 2 23 329 350 328 350 0.96 4 16 0.00017 0.013 16.0 0.6 1 23 354 377 354 377 0.97 5 16 0.027 2.1 9.1 0.5 2 22 383 403 382 403 0.92 6 16 0.055 4.3 8.2 2.2 1 23 410 433 410 433 0.93 7 16 0.011 0.89 10.3 0.5 2 23 441 462 441 463 0.95 8 16 5.7e-05 0.0044 17.6 0.8 2 21 469 488 468 489 0.94 9 16 0.24 19 6.2 0.4 2 23 567 589 566 589 0.91 10 16 0.00032 0.024 15.2 2.1 1 23 637 660 637 660 0.95 11 16 0.74 57 4.6 0.5 3 20 667 684 665 686 0.88 12 16 1.7 1.3e+02 3.5 0.8 3 23 695 716 694 716 0.89 13 16 0.00023 0.018 15.7 0.6 1 23 723 746 723 746 0.96 14 16 0.023 1.8 9.3 1.9 1 23 751 773 751 773 0.95 15 16 3e-05 0.0023 18.5 0.1 1 20 779 798 779 801 0.94 16 16 0.00037 0.029 15.0 4.8 1 23 807 830 807 830 0.97
Sequence Information
- Coding Sequence
- ATGGAGGGTAAAGTTTGGCGACCCGGCCCAACTGTTTGTCGTTGCTGTTTATCGGAAGGATGCTATAAGGATATTTCTACGGAATATTTCTGGATGGGAAAGAAAGAGGTTTACGCAGACATGCTCTCAGATACCTTCGATCTATCTATTCAATATGCACCAACTGGTGGGCCGAACAGTCAGAGCCGTTTGATATGTGAACCTTGCATCTCCAGGCTACGGGATGCCACCGACTTTAGGAGACAGATAAAGGAATGTGAACAGACTTTTATGGAATACCTGAACCCTAGTACAACTGTTGATATTGAAATTCCAGTGGAACTACCTGAGAAGGAGCACAAAATTGTAAGCGTCAAAGTTGAGAAACCGTTGAGCGATGATGATGACTTTGGTGATACGGAGTTACTTGATGATGATGATCTTGACGATGAGCCTCTAATGAATTTAGCATCTAAAGTCCCAAAGAAGGAGAGTGTAGATGTGACGGATTTAATAGACAATGCGAAAGCGGAAAAGCGAAAATCAACGACAAAGGCAAAAGCCGCCCCTAAAAAGGCTAAAGTTAAAGAGGCAAAACCGTCTGTGAGCAAAGCTAAACCGGAGAAGAAGAAGAAAGCCGAAACAGAGGACCCTGTACGGAAAAACGCGGAAATAATAATGCGACGTACAACCGCTAGTCCGTTTCGCGTTAACGATAGGTGCGTTCTATGCGTCTACTGCCAGGATTTATTCGAGGATCCTGACGAGTTCCGCTCCCACATGAGCGCAGAACACCATACGTTCAGTTCCAAGGTCGCCTTCTACAACCTACCCAAATCCGAGTTCATCAAAGCCGATATCACAGACCTACGATGCCGCGTTTGCTCGGAGAAGTTCACTGACATTGACACCATAGCCAGGCATTTGAATGATTCGCACGACGAGCGAATAGAATTCAATGCCAAACTTGGTGTGATGCCATACAGGCTGCTTAAAGGTGCATTATCGTGTACAATATGTTTTAAACCACTGCCGTCCGTCTTCCACTTGAACCGACACACGATAACACACTTCCAAACCTATGTGTGTCACGTGTGCGGCAAAAGTTACGTAGCGACCACGGGTCTTCTGCGCCATGTGCGTCTGAAACATCAGGAGTACCAAATCACATGCAGAAACTGTGGCAAGGTCTTTCCCAATATGGAGGCGAAGGATAAGCATCATAGAACAGAGAAGTCGTGTATGCTGTACATCTGCAATAAATGCAAGGAGCGCTTCCAGGATCACAACGCAAGGTTGAAACACATGGAGGCGAAACACGGCCTGGATAAACGTCAGAATCGATGCGCCGATTGTGATATGATTTTTAATAGTGTCTCGGCGTATTATGCACATTTTAAAGTGCATCATTCGAACGATTATGTCGTCTGTAAACATTGTGGGCAGAGGTTCACCTCCAGGTGGCGTCTGCAGCGGCATCTGAAAGTGTCCAATGAATATACCATCGCGAAGCGCAACGCAGAGTTATTGGTGAAATACACAACCACCTACCCCTTCAGACTCCCGGAGGAGTCTATGGTCTGTGTTTACTGCTGTGAGAGCATCCAAGACGGTCCAAGCTATAGAAAGCACATGGTCGAAGAGCATCCTACCTTCAAAGTACGAATGGCGTTCGCTCATGTCACCGAAGGCTTCCTCAAAGCCGATATCACGGACCTTAGCTGTCGGATCTGCTTCACAGCATTCGATTCACTGGAAGATATCGCACGACATCTTCACGATATGCACCAGAAGCCGATAGATGTGAATCTTGATTTGGGCATTCAACCATTCAGGCTGGAAGGTGATAAACTCCAGTGCGCGATGTGCTCAGCCAAAGCTATATGTCTCAGACAGCTGAGCAGACACACCCAATCCCATTTCTCCAAGTTCACATGTGAAGCGTGCGGGAAGTCATATTCAACCATCACCACTCTGAAACATCATATCACATACTCCCATAGCGGTGGTAATAAAATGTGTAGGAAATGCAAGACTACATTTGATACGCTGGAGGCGAGAAGAGAACACGTCTACACCTCGAAAAAGTGTTGGACGAACATGTGCAATTTGTGTAACGAACGATTCCTCAATTGGAAGACGAAACAGGAGCATTTGACCCAAGTACATGGTTTGACGAAGAAGACCTATGTCTGTCCGGAGTGTCCACTAGTTTTTGATGATCGGAAGAAATACAGAACGCATTTTCGACTGTCCCACACGGAAGATATATTCGTCTGCACATGCTGTGGACTCAAGTTTGATACGAAGAAGAATTTGGATGAACACAGAGTGATTCATACGAAAGAGAAACTGTTCCCTTGTCCTGTGTGCTCCAAAGCATTCCCGCGAAAGAAGAACTTGGTTCAGCACCTCTGGATTCATAGTGAATTGAAGAGATTCAGTTGCACGCTGTGCAATAAGCATTTTAACCAGAGAGTGACGTGGAAGAGTCACATGAAATCCTATCACCCTGAAATAGAGGATTATCAGGATATGATGAACAAGAATGTGAAAATTCTTCTCAGTGTCGATAAGAGTGATGTATGA
- Protein Sequence
- MEGKVWRPGPTVCRCCLSEGCYKDISTEYFWMGKKEVYADMLSDTFDLSIQYAPTGGPNSQSRLICEPCISRLRDATDFRRQIKECEQTFMEYLNPSTTVDIEIPVELPEKEHKIVSVKVEKPLSDDDDFGDTELLDDDDLDDEPLMNLASKVPKKESVDVTDLIDNAKAEKRKSTTKAKAAPKKAKVKEAKPSVSKAKPEKKKKAETEDPVRKNAEIIMRRTTASPFRVNDRCVLCVYCQDLFEDPDEFRSHMSAEHHTFSSKVAFYNLPKSEFIKADITDLRCRVCSEKFTDIDTIARHLNDSHDERIEFNAKLGVMPYRLLKGALSCTICFKPLPSVFHLNRHTITHFQTYVCHVCGKSYVATTGLLRHVRLKHQEYQITCRNCGKVFPNMEAKDKHHRTEKSCMLYICNKCKERFQDHNARLKHMEAKHGLDKRQNRCADCDMIFNSVSAYYAHFKVHHSNDYVVCKHCGQRFTSRWRLQRHLKVSNEYTIAKRNAELLVKYTTTYPFRLPEESMVCVYCCESIQDGPSYRKHMVEEHPTFKVRMAFAHVTEGFLKADITDLSCRICFTAFDSLEDIARHLHDMHQKPIDVNLDLGIQPFRLEGDKLQCAMCSAKAICLRQLSRHTQSHFSKFTCEACGKSYSTITTLKHHITYSHSGGNKMCRKCKTTFDTLEARREHVYTSKKCWTNMCNLCNERFLNWKTKQEHLTQVHGLTKKTYVCPECPLVFDDRKKYRTHFRLSHTEDIFVCTCCGLKFDTKKNLDEHRVIHTKEKLFPCPVCSKAFPRKKNLVQHLWIHSELKRFSCTLCNKHFNQRVTWKSHMKSYHPEIEDYQDMMNKNVKILLSVDKSDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -